Detailed information NTG0945899

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFX5S_RS05650
• Genome accession: NZ_CP171242
• Coordinates: 1170631..1171623 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli Nissle 1917
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1165631..1176623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFX5S_RS05620 (ACFX5S_05620)	ispD	1165692..1166402 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACFX5S_RS05625 (ACFX5S_05625)	ispF	1166402..1166881 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFX5S_RS05630 (ACFX5S_05630)	truD	1166878..1167927 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
ACFX5S_RS05635 (ACFX5S_05635)	surE	1167908..1168669 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACFX5S_RS05640 (ACFX5S_05640)	pcm	1168663..1169289 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ACFX5S_RS05645 (ACFX5S_05645)	nlpD	1169474..1170568 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
ACFX5S_RS05650 (ACFX5S_05650)	rpoS	1170631..1171623 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACFX5S_RS05655 (ACFX5S_05655)	-	1171801..1172352 (-)	552	WP_001179443.1	flavodoxin family protein	-
ACFX5S_RS05660 (ACFX5S_05660)	-	1172577..1173620 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
ACFX5S_RS05665 (ACFX5S_05665)	ygbN	1173763..1175127 (-)	1365	WP_000104433.1	GntP family transporter	-
ACFX5S_RS05670 (ACFX5S_05670)	ygbM	1175216..1175992 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=945899 ACFX5S_RS05650 WP_000081550.1 1170631..1171623(+) (rpoS) [Escherichia coli Nissle 1917]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=945899 ACFX5S_RS05650 WP_000081550.1 1170631..1171623(+) (rpoS) [Escherichia coli Nissle 1917]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715