Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R9A04_RS00935 Genome accession   NZ_AP028402
Coordinates   190055..191560 (-) Length   501 a.a.
NCBI ID   WP_317729830.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 185055..196560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS00905 (B11531_01780) - 185257..186441 (-) 1185 WP_317729827.1 metallophosphoesterase -
  R9A04_RS00910 (B11531_01790) - 186451..186660 (-) 210 WP_317729828.1 alkylphosphonate utilization protein -
  R9A04_RS00915 (B11531_01800) - 186653..187372 (-) 720 WP_002893866.1 TerC family protein -
  R9A04_RS00920 (B11531_01810) purN 187444..188010 (-) 567 WP_002864335.1 phosphoribosylglycinamide formyltransferase -
  R9A04_RS00925 (B11531_01820) - 188001..189371 (-) 1371 WP_227930771.1 NAD(P)H-hydrate dehydratase -
  R9A04_RS00930 (B11531_01830) - 189355..190053 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R9A04_RS00935 (B11531_01840) comM 190055..191560 (-) 1506 WP_317729830.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R9A04_RS00940 (B11531_01850) def 191557..192084 (-) 528 WP_317729831.1 peptide deformylase -
  R9A04_RS00945 (B11531_01860) clpP 192120..192704 (-) 585 WP_317729832.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R9A04_RS00950 (B11531_01870) tig 192704..194038 (-) 1335 WP_052775601.1 trigger factor -
  R9A04_RS00955 (B11531_01880) folE 194182..194754 (+) 573 WP_002854344.1 GTP cyclohydrolase I FolE -
  R9A04_RS00960 (B11531_01890) fliI 194754..196139 (+) 1386 WP_002854283.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56433.50 Da        Isoelectric Point: 8.7406

>NTDB_id=94588 R9A04_RS00935 WP_317729830.1 190055..191560(-) (comM) [Campylobacter jejuni strain BCH-11531]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLKEPLEDHKIHISRVNSKIIYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94588 R9A04_RS00935 WP_317729830.1 190055..191560(-) (comM) [Campylobacter jejuni strain BCH-11531]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGACATCAAAGGGCAAGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAATGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAAAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCATTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473

Multiple sequence alignment