Detailed information NTG0945792

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACEPLV_RS06875
• Genome accession: NZ_CP171230
• Coordinates: 1469706..1470710 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAXJ
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1464706..1475710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPLV_RS06845 (ACEPLV_06845)	fghA	1464798..1465649 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACEPLV_RS06850 (ACEPLV_06850)	ispF	1465720..1466193 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACEPLV_RS06855 (ACEPLV_06855)	truD	1466190..1467257 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ACEPLV_RS06860 (ACEPLV_06860)	surE	1467245..1467994 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACEPLV_RS06865 (ACEPLV_06865)	-	1468027..1468662 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACEPLV_RS06870 (ACEPLV_06870)	-	1468708..1469601 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACEPLV_RS06875 (ACEPLV_06875)	rpoS	1469706..1470710 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACEPLV_RS06880 (ACEPLV_06880)	fdxA	1471136..1471459 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ACEPLV_RS06885 (ACEPLV_06885)	mutS	1471526..1474093 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACEPLV_RS06890 (ACEPLV_06890)	-	1474219..1475226 (-)	1008	WP_113886799.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=945792 ACEPLV_RS06875 WP_003113871.1 1469706..1470710(+) (rpoS) [Pseudomonas aeruginosa strain PAXJ]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=945792 ACEPLV_RS06875 WP_003113871.1 1469706..1470710(+) (rpoS) [Pseudomonas aeruginosa strain PAXJ]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653