Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACF0HW_RS16200 Genome accession   NZ_CP171208
Coordinates   3269269..3269703 (-) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain HN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3264269..3274703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS16185 - 3264871..3265719 (-) 849 WP_012116834.1 diguanylate cyclase domain-containing protein -
  ACF0HW_RS16190 - 3265700..3266785 (-) 1086 WP_012116833.1 hypothetical protein -
  ACF0HW_RS16195 - 3267019..3269205 (-) 2187 WP_012116832.1 DNA topoisomerase III -
  ACF0HW_RS16200 lrpC 3269269..3269703 (-) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACF0HW_RS16205 - 3269880..3270170 (+) 291 WP_007410179.1 DUF3817 domain-containing protein -
  ACF0HW_RS16210 - 3270208..3271017 (-) 810 WP_012116831.1 lipid II flippase Amj family protein -
  ACF0HW_RS16215 - 3271515..3271937 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACF0HW_RS16220 - 3271944..3272567 (-) 624 WP_012116830.1 GNAT family N-acetyltransferase -
  ACF0HW_RS16225 - 3272655..3273158 (-) 504 WP_012116829.1 D-lyxose/D-mannose family sugar isomerase -
  ACF0HW_RS16230 - 3273171..3274031 (-) 861 WP_023356711.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=945741 ACF0HW_RS16200 WP_007410180.1 3269269..3269703(-) (lrpC) [Bacillus amyloliquefaciens strain HN11]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=945741 ACF0HW_RS16200 WP_007410180.1 3269269..3269703(-) (lrpC) [Bacillus amyloliquefaciens strain HN11]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCATGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792