Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACF0HW_RS14390 Genome accession   NZ_CP171208
Coordinates   2924706..2925422 (-) Length   238 a.a.
NCBI ID   WP_012117069.1    Uniprot ID   A7Z2F7
Organism   Bacillus amyloliquefaciens strain HN11     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2919706..2930422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS14375 - 2921975..2923114 (+) 1140 WP_012117070.1 YibE/F family protein -
  ACF0HW_RS14380 - 2923111..2923872 (+) 762 WP_007408500.1 YibE/F family protein -
  ACF0HW_RS14385 - 2923908..2924573 (-) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  ACF0HW_RS14390 treR 2924706..2925422 (-) 717 WP_012117069.1 trehalose operon repressor Regulator
  ACF0HW_RS14395 treC 2925444..2927129 (-) 1686 WP_012117068.1 alpha,alpha-phosphotrehalase -
  ACF0HW_RS14400 treP 2927205..2928620 (-) 1416 WP_012117067.1 PTS system trehalose-specific EIIBC component -
  ACF0HW_RS14405 - 2928891..2929151 (+) 261 WP_007408496.1 spore germination protein -
  ACF0HW_RS14410 - 2929166..2929408 (+) 243 WP_003155595.1 spore germination protein -
  ACF0HW_RS14415 - 2929424..2929855 (+) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  ACF0HW_RS14420 - 2929865..2930242 (-) 378 WP_007610033.1 DUF1992 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.50 Da        Isoelectric Point: 7.3803

>NTDB_id=945735 ACF0HW_RS14390 WP_012117069.1 2924706..2925422(-) (treR) [Bacillus amyloliquefaciens strain HN11]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=945735 ACF0HW_RS14390 WP_012117069.1 2924706..2925422(-) (treR) [Bacillus amyloliquefaciens strain HN11]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTTGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z2F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424