Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACF0HW_RS13225 Genome accession   NZ_CP171208
Coordinates   2708855..2709598 (-) Length   247 a.a.
NCBI ID   WP_003155231.1    Uniprot ID   A7Z316
Organism   Bacillus amyloliquefaciens strain HN11     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703855..2714598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS13205 - 2704224..2705609 (+) 1386 WP_012117213.1 hypothetical protein -
  ACF0HW_RS13210 - 2705679..2706866 (+) 1188 WP_012117212.1 M20 family metallopeptidase -
  ACF0HW_RS13215 - 2706889..2707593 (-) 705 WP_012117211.1 EcsC family protein -
  ACF0HW_RS13220 - 2707636..2708862 (-) 1227 WP_012117210.1 ABC transporter permease -
  ACF0HW_RS13225 pptA 2708855..2709598 (-) 744 WP_003155231.1 ABC transporter ATP-binding protein EcsA Regulator
  ACF0HW_RS13230 - 2710089..2710526 (+) 438 WP_007409220.1 HIT family protein -
  ACF0HW_RS13235 serC 2710662..2711741 (+) 1080 WP_012117209.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  ACF0HW_RS13240 - 2711862..2712380 (+) 519 WP_012117208.1 tryptophan transporter -
  ACF0HW_RS13245 - 2712438..2712629 (-) 192 WP_007409223.1 hypothetical protein -
  ACF0HW_RS13250 - 2712747..2713103 (+) 357 WP_007409224.1 YtxH domain-containing protein -
  ACF0HW_RS13255 - 2713284..2713895 (+) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -
  ACF0HW_RS13260 - 2713892..2714233 (-) 342 WP_003155243.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27724.14 Da        Isoelectric Point: 5.9140

>NTDB_id=945729 ACF0HW_RS13225 WP_003155231.1 2708855..2709598(-) (pptA) [Bacillus amyloliquefaciens strain HN11]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMKDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=945729 ACF0HW_RS13225 WP_003155231.1 2708855..2709598(-) (pptA) [Bacillus amyloliquefaciens strain HN11]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGATTAATGG
ACCCGCATAAAGGCTCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGTTACCGCTCGCAATTTACGTAC
ATCCCCGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATCTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTCTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAGCAGAAAGTCATGATCATGTGCGCGTTTCTCGCGGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTTGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACGCATATCTTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGAAAGACGCAGCTCTTGATGACTTGTATATCGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z316

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547