Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACF0HW_RS11185 Genome accession   NZ_CP171208
Coordinates   2332863..2333147 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   A7Z459
Organism   Bacillus amyloliquefaciens strain HN11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2327863..2338147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS11165 ade 2327969..2329702 (-) 1734 WP_012117460.1 adenine deaminase -
  ACF0HW_RS11170 ktrC 2329851..2330516 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACF0HW_RS11175 - 2330557..2331384 (-) 828 WP_012117459.1 gamma-glutamylcyclotransferase -
  ACF0HW_RS11180 - 2331386..2332690 (-) 1305 WP_007409646.1 ATP-binding protein -
  ACF0HW_RS11185 abrB 2332863..2333147 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACF0HW_RS11190 mreBH 2333418..2334425 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  ACF0HW_RS11195 - 2334497..2334631 (+) 135 WP_012117458.1 protein YkpC -
  ACF0HW_RS11200 - 2334732..2335964 (+) 1233 WP_012117457.1 aminopeptidase -
  ACF0HW_RS11205 - 2335996..2336904 (-) 909 WP_012117456.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=945706 ACF0HW_RS11185 WP_003154557.1 2332863..2333147(-) (abrB) [Bacillus amyloliquefaciens strain HN11]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=945706 ACF0HW_RS11185 WP_003154557.1 2332863..2333147(-) (abrB) [Bacillus amyloliquefaciens strain HN11]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543