Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACF0HW_RS10875 Genome accession   NZ_CP171208
Coordinates   2229350..2229799 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain HN11     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224350..2234799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS10845 sepM 2224446..2225468 (-) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator
  ACF0HW_RS10850 - 2225474..2226253 (-) 780 WP_007409696.1 patatin family protein -
  ACF0HW_RS10855 ylbJ 2226433..2227659 (+) 1227 WP_012117492.1 sporulation integral membrane protein YlbJ -
  ACF0HW_RS10860 coaD 2227678..2228160 (-) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACF0HW_RS10865 rsmD 2228165..2228719 (-) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACF0HW_RS10870 - 2229019..2229291 (-) 273 WP_003154470.1 YlbG family protein -
  ACF0HW_RS10875 ylbF 2229350..2229799 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  ACF0HW_RS10880 - 2229870..2230109 (-) 240 WP_003154475.1 YlbE-like family protein -
  ACF0HW_RS10885 - 2230125..2230535 (-) 411 WP_012117491.1 YlbD family protein -
  ACF0HW_RS10890 - 2230711..2231751 (-) 1041 WP_007409690.1 CAP domain-containing protein -
  ACF0HW_RS10895 - 2231836..2232279 (-) 444 WP_003154478.1 CBS domain-containing protein -
  ACF0HW_RS10900 - 2232420..2232779 (+) 360 WP_012117490.1 YugN family protein -
  ACF0HW_RS10905 ctaG 2232814..2233698 (-) 885 WP_023356881.1 cytochrome c oxidase assembly factor CtaG -
  ACF0HW_RS10910 ctaF 2233723..2234055 (-) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  ACF0HW_RS10915 ctaE 2234058..2234681 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=945705 ACF0HW_RS10875 WP_003154472.1 2229350..2229799(-) (ylbF) [Bacillus amyloliquefaciens strain HN11]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=945705 ACF0HW_RS10875 WP_003154472.1 2229350..2229799(-) (ylbF) [Bacillus amyloliquefaciens strain HN11]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879