Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACF0HW_RS10215 Genome accession   NZ_CP171208
Coordinates   2095203..2095565 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain HN11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090203..2100565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS10190 flhB 2091728..2092807 (-) 1080 WP_007409787.1 flagellar biosynthesis protein FlhB -
  ACF0HW_RS10195 fliR 2092807..2093586 (-) 780 WP_012117557.1 flagellar biosynthetic protein FliR -
  ACF0HW_RS10200 fliQ 2093593..2093862 (-) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  ACF0HW_RS10205 fliP 2093877..2094542 (-) 666 WP_012117556.1 flagellar type III secretion system pore protein FliP -
  ACF0HW_RS10210 fliZ 2094535..2095188 (-) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  ACF0HW_RS10215 pilH 2095203..2095565 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  ACF0HW_RS10220 fliY 2095592..2096728 (-) 1137 WP_012117555.1 flagellar motor switch phosphatase FliY -
  ACF0HW_RS10225 fliM 2096718..2097716 (-) 999 WP_003154240.1 flagellar motor switch protein FliM -
  ACF0HW_RS10230 fliL 2097750..2098169 (-) 420 WP_003154241.1 flagellar basal body-associated protein FliL -
  ACF0HW_RS10235 - 2098166..2098381 (-) 216 WP_003154243.1 flagellar FlbD family protein -
  ACF0HW_RS10240 flgG 2098421..2099197 (-) 777 WP_007409783.1 flagellar basal body rod protein FlgG -
  ACF0HW_RS10245 flgD 2099222..2099662 (-) 441 WP_012117554.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=945696 ACF0HW_RS10215 WP_003154238.1 2095203..2095565(-) (pilH) [Bacillus amyloliquefaciens strain HN11]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=945696 ACF0HW_RS10215 WP_003154238.1 2095203..2095565(-) (pilH) [Bacillus amyloliquefaciens strain HN11]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTCGAAAAATTCAAAGAGCATTCCCCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTTTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATTATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCTATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383