Detailed information NTG0945628

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACF0HW_RS01185
• Genome accession: NZ_CP171208
• Coordinates: 227515..228645 (+)
• Length: 376 a.a.
• NCBI ID: WP_007407584.1
• Uniprot ID: A7Z9N9
• Organism: Bacillus amyloliquefaciens strain HN11
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 222515..233645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF0HW_RS01160	-	223472..224158 (+)	687	WP_007407590.1	VWA domain-containing protein	-
ACF0HW_RS01165	-	224468..225148 (+)	681	WP_012118657.1	VWA domain-containing protein	-
ACF0HW_RS01170	-	225234..225398 (+)	165	WP_007407587.1	hypothetical protein	-
ACF0HW_RS01175	fdhD	225493..226281 (+)	789	WP_012118656.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
ACF0HW_RS01180	moaA	226299..227324 (+)	1026	WP_012118655.1	GTP 3',8-cyclase MoaA	-
ACF0HW_RS01185	rapC	227515..228645 (+)	1131	WP_007407584.1	tetratricopeptide repeat protein	Regulator
ACF0HW_RS01190	-	228767..229246 (+)	480	WP_012118654.1	hypothetical protein	-
ACF0HW_RS01195	-	229321..229509 (+)	189	WP_012118653.1	CsbD family protein	-
ACF0HW_RS01200	ureA	229863..230180 (+)	318	WP_007407581.1	urease subunit gamma	-
ACF0HW_RS01205	ureB	230177..230551 (+)	375	WP_012118652.1	urease subunit beta	-
ACF0HW_RS01210	ureC	230548..232257 (+)	1710	WP_012118651.1	urease subunit alpha	-
ACF0HW_RS01215	-	232398..232802 (+)	405	WP_007614341.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.03 Da
• Isoelectric Point: 5.3221

>NTDB_id=945628 ACF0HW_RS01185 WP_007407584.1 227515..228645(+) (rapC) [Bacillus amyloliquefaciens strain HN11]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=945628 ACF0HW_RS01185 WP_007407584.1 227515..228645(+) (rapC) [Bacillus amyloliquefaciens strain HN11]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTTCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

3D structure

• AlphaFold DB: A7Z9N9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399