Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACF3OJ_RS11240 Genome accession   NZ_CP171111
Coordinates   2327846..2329996 (+) Length   716 a.a.
NCBI ID   WP_392405738.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2322846..2334996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS11210 (ACF3OJ_11210) fabG 2322997..2323758 (-) 762 WP_004141233.1 3-oxoacyl-ACP reductase FabG -
  ACF3OJ_RS11215 (ACF3OJ_11215) - 2323863..2325452 (+) 1590 WP_392405735.1 peptide chain release factor 3 -
  ACF3OJ_RS11220 (ACF3OJ_11220) - 2325570..2325773 (-) 204 WP_048715570.1 glycine zipper 2TM domain-containing protein -
  ACF3OJ_RS11225 (ACF3OJ_11225) - 2325883..2326095 (-) 213 WP_048715567.1 hypothetical protein -
  ACF3OJ_RS11230 (ACF3OJ_11230) - 2326203..2327021 (-) 819 WP_392405736.1 metal ABC transporter permease -
  ACF3OJ_RS11235 (ACF3OJ_11235) - 2327078..2327785 (-) 708 WP_392405737.1 ATP-binding cassette domain-containing protein -
  ACF3OJ_RS11240 (ACF3OJ_11240) priA 2327846..2329996 (+) 2151 WP_392405738.1 primosomal protein N' Machinery gene
  ACF3OJ_RS11245 (ACF3OJ_11245) dksA 2330106..2330531 (+) 426 WP_004141211.1 RNA polymerase-binding protein DksA -
  ACF3OJ_RS11255 (ACF3OJ_11255) - 2330746..2332896 (-) 2151 WP_392405739.1 RelA/SpoT family protein -
  ACF3OJ_RS11260 (ACF3OJ_11260) - 2332963..2334015 (-) 1053 WP_392405740.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 78350.45 Da        Isoelectric Point: 8.6870

>NTDB_id=945618 ACF3OJ_RS11240 WP_392405738.1 2327846..2329996(+) (priA) [Cardiobacterium hominis strain WGS1530]
MRVSVAVPRPLAGSFDYLCHEPVAVGARVRVPFGRGQVIGVVVAVAPDALDDGSLKTVARVLDDAPLLDAPLLQLLHFAA
RYYQHPLGEVVQAALPKLLREGRAATRDLPRYWRITAAGRAALAGRLGGKQAAVLSALHENEQLEAALRAAHHCGAGWLR
DLEKRGWLEARAHWHGLDAPAAAAPTLNAEQTAALAALPDRGFTATLLDGVTGSGKTEIYIRWIEHLTADGGQVLLLVPE
IGLVRTLAARLAARLGDRIAVHHSALADGARLEQWLAVRAGDAQVLVGTRSAVFAPCPALRGIIIDEEHDAAYKQQDGFR
YHARDLALKRAQQAGIPILLGSATPSLESYHQVWRGHWQHLRLTARAATTTPPAIHLENMDGAAASGGMSHELIRAMRRT
LADGGQTLLFLNRRGYAPLLRCDACDWHAACDACDAMLTVHTASHRLQCHHCGREQPLPTRCPACHSDSLHMLGLGTQRL
EQSVARQFPQARLLRIDSDSYTTSRQFEAALAQVQAGEVDIILGTQWLSKGHHFPRLHLAAVVDADQALYSLDYRGEERL
AQLLVQVGGRAGRESQGQIWIQTRQPQHPVFTVLNSPYEDTARRLYEQRARAQLPPHRAQVALLARHTDAERALQTLAFT
RDGAQQAGIGQNWQWLGPAPALMPRKDGQHRAHLLVQADSRAALQKELPQLTAWLHAQGKAFRVRVAVDVDPLWLE

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=945618 ACF3OJ_RS11240 WP_392405738.1 2327846..2329996(+) (priA) [Cardiobacterium hominis strain WGS1530]
ATGCGGGTTAGCGTCGCGGTGCCGCGTCCGCTTGCGGGCAGTTTTGATTATTTGTGCCATGAGCCGGTCGCGGTTGGCGC
GCGAGTGCGGGTGCCGTTTGGCCGCGGGCAGGTGATTGGCGTCGTCGTCGCCGTCGCGCCGGATGCGCTGGACGACGGCT
CGCTGAAAACCGTCGCCCGCGTGTTGGACGACGCGCCGCTGCTGGACGCACCGCTGCTCCAGTTGCTGCACTTTGCCGCG
CGCTACTACCAGCACCCGCTGGGCGAAGTGGTGCAGGCGGCGCTGCCGAAACTGCTGCGCGAAGGACGGGCGGCAACGCG
CGACCTGCCGCGCTACTGGCGCATCACCGCCGCCGGACGCGCAGCGCTCGCCGGACGCCTCGGCGGCAAACAGGCGGCCG
TTCTCAGCGCGCTCCATGAAAACGAACAGCTTGAGGCCGCGCTGCGCGCCGCGCACCATTGCGGCGCGGGCTGGTTGCGC
GACCTCGAAAAACGCGGCTGGCTGGAAGCACGCGCCCATTGGCACGGACTTGACGCCCCCGCCGCCGCCGCGCCGACGCT
GAACGCCGAACAGACCGCCGCCCTCGCCGCCCTGCCCGACCGCGGCTTCACTGCCACCCTGCTCGATGGCGTTACCGGCT
CCGGCAAAACCGAAATCTACATCCGCTGGATTGAGCACTTGACCGCAGACGGCGGCCAGGTACTGCTGCTCGTACCGGAA
ATCGGCCTCGTCCGCACCCTCGCCGCCCGTCTCGCCGCGCGCCTGGGCGACCGCATCGCCGTGCATCACTCGGCGCTGGC
CGACGGCGCCCGCCTCGAACAATGGCTGGCGGTACGCGCTGGCGACGCGCAAGTGCTGGTCGGCACACGCTCCGCCGTCT
TCGCGCCCTGCCCTGCCCTGCGCGGCATCATCATCGACGAAGAACACGACGCCGCCTACAAACAACAAGACGGCTTCCGC
TACCACGCGCGCGACCTCGCCTTAAAACGCGCGCAACAGGCAGGCATCCCCATCCTTCTCGGCTCGGCAACGCCCTCGCT
GGAAAGCTACCACCAAGTGTGGCGCGGCCACTGGCAACATCTGCGCCTGACTGCGCGCGCCGCCACGACAACGCCCCCCG
CCATCCATCTGGAAAACATGGACGGCGCAGCGGCCAGCGGCGGCATGAGCCACGAACTCATCCGCGCCATGCGCCGCACC
CTCGCCGACGGCGGCCAAACCCTGCTCTTTCTCAACCGCCGCGGCTACGCGCCGCTCCTGCGCTGCGACGCCTGCGACTG
GCACGCCGCCTGCGACGCCTGCGACGCCATGCTCACCGTGCACACCGCCAGCCACCGGCTGCAATGCCACCACTGCGGGC
GGGAACAACCCTTGCCGACACGCTGCCCCGCCTGCCACAGCGACAGCCTGCACATGCTCGGCCTCGGCACGCAGCGCCTC
GAACAAAGCGTCGCCCGCCAATTCCCGCAGGCGCGCCTCCTGCGCATTGACAGCGACAGCTACACCACCAGCCGCCAATT
CGAAGCGGCGCTGGCACAAGTACAGGCGGGCGAAGTGGACATCATCCTTGGTACCCAATGGCTCTCCAAAGGGCACCACT
TCCCGCGCCTGCACCTTGCCGCCGTCGTCGATGCCGACCAGGCGCTGTACAGCCTGGACTACCGCGGCGAAGAACGGCTG
GCGCAACTGCTGGTGCAAGTCGGCGGCCGCGCCGGACGCGAAAGCCAGGGACAAATCTGGATACAAACGCGCCAGCCGCA
GCATCCCGTCTTCACCGTCCTGAACAGCCCCTACGAAGATACCGCCCGCCGCCTCTACGAACAGCGCGCGCGGGCGCAAC
TGCCACCGCACCGCGCACAGGTGGCACTGCTTGCCCGCCATACCGACGCCGAACGCGCCCTGCAAACCCTCGCCTTCACC
CGCGACGGCGCACAACAGGCAGGCATCGGCCAAAACTGGCAATGGCTCGGCCCCGCGCCAGCCCTCATGCCGCGCAAAGA
CGGACAGCACCGCGCGCACCTGCTGGTGCAAGCCGACAGCCGCGCCGCCTTGCAAAAAGAACTGCCGCAACTGACCGCCT
GGCTGCACGCACAGGGCAAGGCCTTTCGCGTGCGCGTCGCGGTGGACGTCGATCCGCTCTGGCTGGAATAA

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(431-457)

Primosomal protein N C-terminal domain (PriA_C)

(616-712)

DEAD/DEAH box helicase (DEAD)

(205-350)

3DNA-binding domain (3BD) (PriA_3primeBD)

(4-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

41.144

100

0.422