Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACF3OJ_RS02410 Genome accession   NZ_CP171111
Coordinates   462656..464032 (-) Length   458 a.a.
NCBI ID   WP_392406288.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457656..469032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS02385 (ACF3OJ_02385) - 458023..458601 (-) 579 WP_392406283.1 DUF4189 domain-containing protein -
  ACF3OJ_RS02390 (ACF3OJ_02390) - 458738..459496 (+) 759 WP_392406284.1 DNA polymerase beta superfamily protein -
  ACF3OJ_RS02395 (ACF3OJ_02395) - 459490..460545 (+) 1056 WP_392406285.1 DNA polymerase beta superfamily protein -
  ACF3OJ_RS02400 (ACF3OJ_02400) hemH 460666..461655 (-) 990 WP_392406287.1 ferrochelatase -
  ACF3OJ_RS02405 (ACF3OJ_02405) galU 461766..462644 (-) 879 WP_004139194.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACF3OJ_RS02410 (ACF3OJ_02410) radA/sms 462656..464032 (-) 1377 WP_392406288.1 DNA repair protein RadA Machinery gene
  ACF3OJ_RS02415 (ACF3OJ_02415) alr 464025..465092 (-) 1068 WP_392406290.1 alanine racemase -
  ACF3OJ_RS02420 (ACF3OJ_02420) csm6 465160..466242 (-) 1083 WP_079539193.1 CRISPR-associated ring nuclease Csm6 -
  ACF3OJ_RS02425 (ACF3OJ_02425) - 466257..466748 (-) 492 WP_143312210.1 hypothetical protein -
  ACF3OJ_RS02430 (ACF3OJ_02430) - 466911..467267 (-) 357 WP_079539198.1 hypothetical protein -
  ACF3OJ_RS02435 (ACF3OJ_02435) - 467361..467750 (-) 390 WP_079539200.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48062.43 Da        Isoelectric Point: 8.2611

>NTDB_id=945577 ACF3OJ_RS02410 WP_392406288.1 462656..464032(-) (radA/sms) [Cardiobacterium hominis strain WGS1530]
MAKAKSRFVCRDCGAVYPKWQGQCHECGAWNTLEKEAAPVAAPRAGKGGGYAGVAAGQVQRLDAVELQAETLVPSGISEF
DRVLGGGLVRGSVVLIGGDPGIGKSTLLLQTVHHLAQSMPCLYVSGEESPRQIGLRAERLGLARERIVLFSETQIERILA
TAAAEQPAVLVVDSIQTLYSEALSAAPGAVSQLRECAAQLVRFAKSSGTTVFLIGHVTKEGAIAGPRVLEHMVDTVLYFE
SEAGSRFRMLRAVKNRFGPVNELGMFAMLENGLKPVSNPSAIFLSRPDGQQPGSAVFPVWEGSRALLVEVQALVDGGGGG
YARRTALGFDSGRLAMLLAVLHRHGGVSLHDMDVYVNVVGGLKISEPAADLAVLAAAHSSLRGVAIPRDVVIMGEVGLAG
ELRPVANGEARIKAAAQHGFKQVILPEGNKPRGSATMRGLQIHAVATLAAALDVLSSL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=945577 ACF3OJ_RS02410 WP_392406288.1 462656..464032(-) (radA/sms) [Cardiobacterium hominis strain WGS1530]
ATGGCTAAGGCGAAGTCGCGTTTTGTCTGCCGCGATTGCGGCGCGGTGTATCCGAAATGGCAGGGGCAGTGCCACGAGTG
CGGCGCATGGAACACGCTGGAGAAGGAAGCGGCGCCGGTCGCAGCGCCGCGCGCGGGCAAGGGCGGCGGTTATGCCGGGG
TTGCCGCCGGACAGGTGCAGCGGCTCGATGCGGTGGAGTTGCAGGCGGAAACGCTGGTGCCGAGCGGCATCAGCGAGTTT
GACCGCGTTCTCGGCGGCGGGCTGGTACGCGGCAGCGTGGTACTGATTGGTGGCGATCCGGGCATCGGCAAATCGACGCT
GTTGTTGCAGACGGTGCATCATTTGGCGCAGTCGATGCCGTGTTTGTATGTCAGCGGCGAGGAGTCGCCGCGCCAGATTG
GGCTGCGCGCCGAGCGGCTGGGGCTCGCGCGCGAGCGCATTGTGCTGTTTAGTGAAACGCAGATTGAGCGTATTTTGGCA
ACGGCCGCGGCGGAGCAGCCGGCGGTGCTGGTGGTCGATTCGATTCAGACGCTTTACAGCGAGGCGCTTTCTGCCGCGCC
GGGTGCGGTCAGCCAGTTGCGCGAGTGCGCAGCGCAGTTGGTGCGCTTTGCCAAGTCAAGCGGCACGACGGTTTTTCTCA
TCGGCCACGTTACCAAGGAGGGCGCGATTGCCGGCCCCCGCGTGCTGGAGCATATGGTCGATACGGTGCTGTATTTTGAA
AGCGAGGCGGGCAGCCGCTTCCGCATGCTGCGCGCGGTGAAGAACCGCTTCGGCCCGGTCAATGAGCTGGGGATGTTCGC
CATGCTGGAGAATGGCTTGAAGCCGGTGAGCAACCCGTCGGCGATTTTCCTCTCGCGCCCGGACGGGCAGCAGCCGGGCA
GCGCCGTTTTTCCGGTGTGGGAAGGCTCGCGCGCGCTCTTGGTCGAGGTGCAGGCGCTGGTTGATGGCGGCGGCGGTGGT
TATGCGCGCCGCACCGCGCTGGGTTTTGACAGCGGGCGGCTGGCGATGCTGCTCGCGGTGTTGCACCGCCACGGCGGCGT
CTCGCTGCACGACATGGATGTGTATGTGAACGTCGTCGGCGGCCTGAAAATCAGCGAACCGGCAGCAGATTTGGCGGTGC
TGGCGGCGGCGCATTCCAGCCTGCGCGGCGTTGCCATTCCGCGCGATGTGGTCATCATGGGCGAGGTCGGCCTGGCGGGT
GAACTGCGCCCGGTGGCGAACGGCGAGGCGCGCATCAAGGCGGCCGCGCAGCACGGTTTCAAACAGGTCATCTTGCCCGA
AGGGAACAAGCCGCGCGGCTCTGCTACAATGCGCGGCCTGCAAATTCACGCGGTTGCGACGCTCGCCGCCGCCCTTGACG
TACTCTCATCCCTATAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(79-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.018

99.127

0.476
  radA Streptococcus pneumoniae Rx1

44.956

99.563

0.448
  radA Streptococcus pneumoniae D39

44.956

99.563

0.448
  radA Streptococcus pneumoniae TIGR4

44.956

99.563

0.448
  radA Streptococcus pneumoniae R6

44.956

99.563

0.448
  radA Streptococcus mitis SK321

44.956

99.563

0.448
  radA Streptococcus mitis NCTC 12261

44.737

99.563

0.445