Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8588_RS03120 Genome accession   NZ_AP028401
Coordinates   594956..595339 (+) Length   127 a.a.
NCBI ID   WP_002871352.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11527     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589956..600339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS03100 (B11527_06130) - 590035..591969 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  R8588_RS03105 (B11527_06140) ilvC 592088..593110 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R8588_RS03110 (B11527_06150) - 593114..594196 (+) 1083 WP_002888479.1 divergent polysaccharide deacetylase family protein -
  R8588_RS03115 (B11527_06160) dprA 594186..594959 (+) 774 WP_002888477.1 DNA-processing protein DprA Machinery gene
  R8588_RS03120 (B11527_06170) dprB 594956..595339 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX Machinery gene
  R8588_RS03125 (B11527_06180) - 595368..596207 (+) 840 WP_079263723.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8588_RS03130 (B11527_06190) msrA 596383..596880 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8588_RS03135 (B11527_06200) ppa 596922..597440 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8588_RS03140 (B11527_06210) adk 597450..598028 (-) 579 WP_002855137.1 adenylate kinase -
  R8588_RS03145 (B11527_06220) aspS 598025..599776 (-) 1752 WP_002888472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14146.63 Da        Isoelectric Point: 9.0848

>NTDB_id=94550 R8588_RS03120 WP_002871352.1 594956..595339(+) (dprB) [Campylobacter jejuni strain BCH-11527]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94550 R8588_RS03120 WP_002871352.1 594956..595339(+) (dprB) [Campylobacter jejuni strain BCH-11527]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGAATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457

Multiple sequence alignment