Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   V4Q90_RS11295 Genome accession   NZ_CP146990
Coordinates   2540197..2540511 (-) Length   104 a.a.
NCBI ID   WP_011214248.1    Uniprot ID   A0A3A6V5J7
Organism   Legionella pneumophila strain LEG1116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2535197..2545511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS11270 (V4Q90_11240) - 2535622..2536122 (-) 501 WP_011214243.1 hypothetical protein -
  V4Q90_RS11275 (V4Q90_11245) - 2536614..2537474 (+) 861 WP_011214244.1 polysaccharide deacetylase family protein -
  V4Q90_RS11280 (V4Q90_11250) - 2537592..2538788 (-) 1197 WP_011214245.1 murein transglycosylase A -
  V4Q90_RS11285 (V4Q90_11255) lpp1976 2538898..2539455 (-) 558 WP_011214246.1 hypothetical protein Machinery gene
  V4Q90_RS11290 (V4Q90_11260) lpp1977 2539452..2540258 (-) 807 WP_011214247.1 hypothetical protein Machinery gene
  V4Q90_RS11295 (V4Q90_11265) lpp1978 2540197..2540511 (-) 315 WP_011214248.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V4Q90_RS11300 (V4Q90_11270) hisC 2540671..2541780 (+) 1110 WP_011214249.1 histidinol-phosphate transaminase -
  V4Q90_RS11305 (V4Q90_11275) - 2541817..2542158 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  V4Q90_RS11310 (V4Q90_11280) secF 2542336..2543253 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  V4Q90_RS11315 (V4Q90_11285) secD 2543266..2545122 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  V4Q90_RS11320 (V4Q90_11290) yajC 2545144..2545479 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12267.42 Da        Isoelectric Point: 10.0591

>NTDB_id=945430 V4Q90_RS11295 WP_011214248.1 2540197..2540511(-) (lpp1978) [Legionella pneumophila strain LEG1116]
MSKHKGFTLMEVLMSLMLMTTVVLMLVDQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=945430 V4Q90_RS11295 WP_011214248.1 2540197..2540511(-) (lpp1978) [Legionella pneumophila strain LEG1116]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGATCAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A6V5J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila str. Paris

100

100

1
  lpp1978 Legionella pneumophila strain ERS1305867

98.077

100

0.981