Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8588_RS00960 Genome accession   NZ_AP028401
Coordinates   184651..186156 (-) Length   501 a.a.
NCBI ID   WP_002887634.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11527     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 179651..191156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS00930 (B11527_01810) - 179853..181037 (-) 1185 WP_020246837.1 metallophosphoesterase -
  R8588_RS00935 (B11527_01820) - 181047..181256 (-) 210 WP_002851709.1 alkylphosphonate utilization protein -
  R8588_RS00940 (B11527_01830) - 181249..181968 (-) 720 WP_002873212.1 TerC family protein -
  R8588_RS00945 (B11527_01840) purN 182040..182606 (-) 567 WP_002887629.1 phosphoribosylglycinamide formyltransferase -
  R8588_RS00950 (B11527_01850) - 182597..183967 (-) 1371 WP_020246838.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8588_RS00955 (B11527_01860) - 183951..184649 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R8588_RS00960 (B11527_01870) comM 184651..186156 (-) 1506 WP_002887634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8588_RS00965 (B11527_01880) def 186153..186680 (-) 528 WP_002851936.1 peptide deformylase -
  R8588_RS00970 (B11527_01890) clpP 186716..187300 (-) 585 WP_002869062.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8588_RS00975 (B11527_01900) tig 187300..188634 (-) 1335 WP_002826916.1 trigger factor -
  R8588_RS00980 (B11527_01910) folE 188778..189350 (+) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  R8588_RS00985 (B11527_01920) fliI 189350..190735 (+) 1386 WP_020246839.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56475.50 Da        Isoelectric Point: 8.7353

>NTDB_id=94542 R8588_RS00960 WP_002887634.1 184651..186156(-) (comM) [Campylobacter jejuni strain BCH-11527]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94542 R8588_RS00960 WP_002887634.1 184651..186156(-) (comM) [Campylobacter jejuni strain BCH-11527]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGACATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGCGTTTGTAGCGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473

Multiple sequence alignment