Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFXAC_RS17435 Genome accession   NZ_CP170720
Coordinates   3578239..3579369 (-) Length   376 a.a.
NCBI ID   WP_053573977.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3573239..3584369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS17400 (ACFXAC_17400) - 3573732..3574043 (-) 312 WP_223609733.1 hypothetical protein -
  ACFXAC_RS17405 (ACFXAC_17405) - 3574081..3574485 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  ACFXAC_RS17410 (ACFXAC_17410) ureC 3574627..3576336 (-) 1710 WP_007407580.1 urease subunit alpha -
  ACFXAC_RS17415 (ACFXAC_17415) ureB 3576333..3576707 (-) 375 WP_053573978.1 urease subunit beta -
  ACFXAC_RS17420 (ACFXAC_17420) ureA 3576704..3577021 (-) 318 WP_007407581.1 urease subunit gamma -
  ACFXAC_RS17425 (ACFXAC_17425) - 3577375..3577563 (-) 189 WP_003151197.1 CsbD family protein -
  ACFXAC_RS17430 (ACFXAC_17430) - 3577638..3578117 (-) 480 WP_007407583.1 hypothetical protein -
  ACFXAC_RS17435 (ACFXAC_17435) rapC 3578239..3579369 (-) 1131 WP_053573977.1 tetratricopeptide repeat protein Regulator
  ACFXAC_RS17440 (ACFXAC_17440) moaA 3579560..3580585 (-) 1026 WP_014419094.1 GTP 3',8-cyclase MoaA -
  ACFXAC_RS17445 (ACFXAC_17445) fdhD 3580603..3581391 (-) 789 WP_017418742.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACFXAC_RS17450 (ACFXAC_17450) - 3581486..3581650 (-) 165 WP_007407587.1 hypothetical protein -
  ACFXAC_RS17455 (ACFXAC_17455) - 3581736..3582416 (-) 681 WP_015240755.1 VWA domain-containing protein -
  ACFXAC_RS17460 (ACFXAC_17460) - 3582726..3583412 (-) 687 WP_053573976.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44948.05 Da        Isoelectric Point: 5.3221

>NTDB_id=945404 ACFXAC_RS17435 WP_053573977.1 3578239..3579369(-) (rapC) [Bacillus amyloliquefaciens strain JP5006]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=945404 ACFXAC_RS17435 WP_053573977.1 3578239..3579369(-) (rapC) [Bacillus amyloliquefaciens strain JP5006]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGTATATCAGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGAAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCTCTCAATATGGATTTAATTCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399