Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   ACFXAC_RS15475 Genome accession   NZ_CP170720
Coordinates   3157552..3158898 (-) Length   448 a.a.
NCBI ID   WP_053574094.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152552..3163898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS15450 (ACFXAC_15450) - 3152662..3153486 (-) 825 WP_014418835.1 ABC transporter ATP-binding protein -
  ACFXAC_RS15455 (ACFXAC_15455) - 3153642..3154079 (-) 438 WP_017418952.1 YusW family protein -
  ACFXAC_RS15460 (ACFXAC_15460) - 3154198..3155979 (-) 1782 WP_053574095.1 M3 family oligoendopeptidase -
  ACFXAC_RS15465 (ACFXAC_15465) - 3156112..3156951 (+) 840 WP_039253925.1 oxidoreductase -
  ACFXAC_RS15470 (ACFXAC_15470) - 3157041..3157505 (+) 465 WP_007410071.1 Dps family protein -
  ACFXAC_RS15475 (ACFXAC_15475) htrA 3157552..3158898 (-) 1347 WP_053574094.1 S1C family serine protease Regulator
  ACFXAC_RS15480 (ACFXAC_15480) - 3159175..3159852 (+) 678 WP_007410069.1 response regulator transcription factor -
  ACFXAC_RS15485 (ACFXAC_15485) - 3159849..3161204 (+) 1356 WP_053574093.1 cell wall metabolism sensor histidine kinase WalK -
  ACFXAC_RS15490 (ACFXAC_15490) spxO 3161231..3161395 (-) 165 WP_003151811.1 anti-adapter protein SpxO -
  ACFXAC_RS15495 (ACFXAC_15495) - 3161574..3162449 (+) 876 WP_007410065.1 TetR/AcrR family transcriptional regulator -
  ACFXAC_RS15500 (ACFXAC_15500) fumC 3162486..3163874 (-) 1389 WP_007410064.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47219.68 Da        Isoelectric Point: 4.9181

>NTDB_id=945387 ACFXAC_RS15475 WP_053574094.1 3157552..3158898(-) (htrA) [Bacillus amyloliquefaciens strain JP5006]
MNDHRDDGRSRDQSDLSHTEQNRNEQQEPELLEGPVSKEAENETAAGTEFEKTAAVKKEKKRRAAWLSPILGGIIGGGLV
LGIVPNLPSEQHKTEAVSDTKQVQSSNFTSTPLKNTSSVADMVEALEPAIVGVSNYQASQSSQFGLDGGSSSETESGTGS
GVIFKKDGEKAYIITNNHVVEGANKLSVTLYNGKTETAKLVGKDAISDLAVLEISSSNVKKAASFGDSSKLRIADKVIAI
GNPLGQQFSGTVTQGVISGLNRTVDADTSQGTVEMNVIQTDAAINPGNSGGPLINSSGQVIGINSMKVSENGVESLGFAI
PSNDVEPIVDQLLAKGKVERPFLGVQMIDMAQVPETYQENTLGLFGDQLSKGVYVKEVQSGSPAAKAGIKSNDVIVQLNG
KDVGSSADIRQILYNQLKIGDKTTVQVLRSGSKKTLNVTLTKQTESAS

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=945387 ACFXAC_RS15475 WP_053574094.1 3157552..3158898(-) (htrA) [Bacillus amyloliquefaciens strain JP5006]
ATGAATGATCATCGAGATGACGGCAGAAGCCGCGATCAGTCAGATCTTTCACATACGGAACAAAACAGAAATGAACAGCA
GGAGCCCGAGCTGCTCGAAGGGCCCGTCTCGAAAGAAGCGGAAAACGAGACGGCGGCCGGTACGGAATTTGAAAAAACGG
CTGCCGTGAAAAAAGAAAAAAAACGGAGAGCCGCTTGGCTGAGCCCGATTTTAGGCGGCATTATCGGCGGCGGCCTCGTG
CTTGGCATTGTGCCAAACCTGCCGAGTGAGCAGCATAAGACAGAAGCCGTTTCTGATACGAAACAAGTTCAGTCTTCGAA
TTTTACGTCAACGCCTTTGAAAAATACCTCAAGCGTAGCGGATATGGTAGAAGCTTTGGAGCCTGCGATTGTCGGAGTGT
CCAACTACCAAGCTTCGCAAAGCAGCCAGTTCGGACTTGACGGCGGTTCAAGCTCTGAAACGGAGAGCGGCACGGGGTCA
GGCGTCATCTTCAAAAAAGACGGCGAAAAAGCGTACATCATTACAAACAACCATGTCGTAGAAGGTGCGAACAAACTGTC
GGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGCTTGTCGGAAAGGATGCCATCAGTGACTTGGCTGTATTGGAAA
TCAGCTCGTCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCATTGCCGATAAAGTGATTGCCATC
GGCAACCCGCTCGGCCAGCAGTTTTCCGGCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAGAACGGTAGACGCCGA
TACATCCCAAGGCACAGTGGAAATGAACGTGATTCAGACGGATGCGGCGATTAACCCCGGAAACAGCGGCGGCCCGTTAA
TCAACTCAAGCGGCCAAGTTATCGGGATCAACAGCATGAAAGTCAGTGAAAACGGCGTGGAATCACTCGGCTTTGCCATT
CCGAGCAATGATGTAGAACCGATAGTCGACCAGCTGCTTGCAAAAGGAAAAGTCGAGCGCCCATTTTTAGGTGTGCAGAT
GATTGACATGGCGCAAGTGCCGGAAACTTATCAGGAAAACACGCTCGGACTGTTCGGCGACCAGCTGTCTAAGGGTGTTT
ACGTAAAAGAAGTGCAGTCCGGCTCGCCGGCTGCGAAAGCGGGCATCAAATCAAATGACGTCATTGTACAATTGAACGGC
AAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCTTATATAATCAGCTGAAAATCGGCGATAAAACGACTGTTCAAGT
TCTCAGAAGCGGAAGCAAAAAGACGCTGAACGTCACATTAACGAAACAAACCGAAAGCGCAAGCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(341-440)

Peptidase family M50 (Peptidase_M50)

(358-446)

Trypsin-like peptidase domain (Trypsin_2)

(159-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

41.162

88.393

0.364