Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFXAC_RS13960 Genome accession   NZ_CP170720
Coordinates   2879851..2880555 (-) Length   234 a.a.
NCBI ID   WP_014418670.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874851..2885555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS13940 (ACFXAC_13940) cysK 2874860..2875831 (+) 972 WP_095352847.1 cysteine synthase A -
  ACFXAC_RS13945 (ACFXAC_13945) pepV 2875869..2877260 (-) 1392 WP_053573111.1 dipeptidase PepV -
  ACFXAC_RS13950 (ACFXAC_13950) - 2877356..2878660 (+) 1305 WP_014418668.1 NCS2 family permease -
  ACFXAC_RS13955 (ACFXAC_13955) - 2878694..2879854 (-) 1161 WP_053573110.1 ABC transporter permease -
  ACFXAC_RS13960 (ACFXAC_13960) pptA 2879851..2880555 (-) 705 WP_014418670.1 ABC transporter ATP-binding protein Regulator
  ACFXAC_RS13965 (ACFXAC_13965) - 2880836..2881057 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACFXAC_RS13970 (ACFXAC_13970) - 2881185..2881904 (-) 720 WP_007408795.1 pseudouridine synthase -
  ACFXAC_RS13975 (ACFXAC_13975) - 2881961..2883598 (-) 1638 WP_053573109.1 polysaccharide biosynthesis protein -
  ACFXAC_RS13980 (ACFXAC_13980) - 2883806..2885071 (+) 1266 WP_007408798.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25726.43 Da        Isoelectric Point: 4.4916

>NTDB_id=945381 ACFXAC_RS13960 WP_014418670.1 2879851..2880555(-) (pptA) [Bacillus amyloliquefaciens strain JP5006]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=945381 ACFXAC_RS13960 WP_014418670.1 2879851..2880555(-) (pptA) [Bacillus amyloliquefaciens strain JP5006]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGCACAGTGATAAAGGCGGTTCTCGGGC
TTTCCCGGGATATAGAAGGCGGTATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCATCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGGGAAGAATGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTCATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453