Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SGN16_RS21115 Genome accession   NZ_CP146985
Coordinates   4819843..4822089 (-) Length   748 a.a.
NCBI ID   WP_335945259.1    Uniprot ID   -
Organism   Pseudomonas sp. G166     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4814843..4827089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN16_RS21080 murB 4815227..4816246 (-) 1020 WP_335945257.1 UDP-N-acetylmuramate dehydrogenase -
  SGN16_RS21085 - 4816243..4816707 (-) 465 WP_335945258.1 low molecular weight protein-tyrosine-phosphatase -
  SGN16_RS21090 kdsB 4816707..4817471 (-) 765 WP_210639825.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SGN16_RS21095 - 4817468..4817653 (-) 186 WP_003179363.1 Trm112 family protein -
  SGN16_RS21100 lpxK 4817676..4818686 (-) 1011 WP_210639826.1 tetraacyldisaccharide 4'-kinase -
  SGN16_RS21105 - 4818686..4819114 (-) 429 WP_210639827.1 biopolymer transporter ExbD -
  SGN16_RS21110 exbB 4819111..4819746 (-) 636 WP_210639828.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SGN16_RS21115 comA 4819843..4822089 (-) 2247 WP_335945259.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGN16_RS21120 - 4822235..4822750 (+) 516 WP_210639830.1 DUF2062 domain-containing protein -
  SGN16_RS21125 - 4822839..4823618 (-) 780 WP_210639831.1 ABC transporter permease -
  SGN16_RS21130 - 4823615..4824547 (-) 933 WP_135846488.1 ABC transporter ATP-binding protein -
  SGN16_RS21135 - 4824679..4825302 (-) 624 WP_335945260.1 glutathione S-transferase -
  SGN16_RS21140 - 4825347..4826006 (-) 660 WP_210639833.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81118.05 Da        Isoelectric Point: 9.6768

>NTDB_id=945345 SGN16_RS21115 WP_335945259.1 4819843..4822089(-) (comA) [Pseudomonas sp. G166]
MRTGLAALAVGLLAPVFLPALPPPWLIAAMPVLGLMVVPFRIYPLGFFLFGLAWACLSAQFALDERLPAALDGETRWVEG
RVVGLPQYGEGAVRFELADAHSRRTPLPSSMRLAWFGGPPVSSGERWRLAVKLKRPSGLLNPDGFDYEAWLLSRGIGATG
TVKDGRRLRAAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPVRLPWLPWACALAFTAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFTGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPLLLLLGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPFMGEGLLWVAGGLLDLMFKGLALAAGRMPAWIPVSVPLWAWCIAALGAFLLLLPKGVPLRVLGWPMLLLLV
FPPRESVPQGHAEIWHLDVGQGLAVLVRTRRHTLLYDAGPRFGEADAGERVVLPTLRKLGVPALDLMLLSHADADHAGGA
RAVHNGLATTRVISGDPGALPDELQAGACDSSERWEWDGVSFELWQWSAALESNQKSCVLLVEAGGERLLLTGDIDSQAE
RALLDGPLALPIQWLAAPHHGSRSSSSMTLLSRLKPHSVLISRGQGNAFGHPHPRVIARYRRLGMAIYDSAEQGAIRLQL
GAFEPPFTQAGQRRYWRDPPSAGLRTEH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=945345 SGN16_RS21115 WP_335945259.1 4819843..4822089(-) (comA) [Pseudomonas sp. G166]
ATGCGCACAGGGTTGGCCGCGCTTGCAGTGGGGTTGTTGGCCCCGGTTTTTCTACCGGCCTTGCCGCCGCCGTGGCTTAT
TGCAGCCATGCCGGTGCTGGGGCTGATGGTTGTGCCGTTTCGAATTTACCCGCTCGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCTTGTCGGCGCAGTTTGCGCTGGACGAGCGGTTGCCTGCCGCGCTGGACGGCGAAACCCGTTGGGTGGAAGGG
CGCGTCGTTGGCTTGCCGCAGTACGGCGAGGGGGCGGTGCGATTCGAACTGGCCGATGCCCATTCACGCCGCACGCCACT
ACCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGGCCGCCTGTCAGCAGTGGCGAGCGCTGGCGATTGGCTGTGAAGCTCA
AACGGCCCTCCGGGTTGCTGAACCCAGACGGTTTCGACTATGAAGCCTGGCTGTTGAGTCGAGGCATCGGGGCGACCGGT
ACGGTAAAGGATGGCCGTCGCCTGCGTGCGGCCCAGGGGGCCTGGCGCGACGGCGTACGACAGGCTCTGGCCCAAGTGGA
TGCCCAGGGGCGCTCCGGGGCGCTGGCGGCCTTGGTGCTTGGGGACGGAAGTGGGCTGAGCCGCGATGACTGGCAGGTGT
TGCAAGATACCGGCACCGTTCATTTACTGGTGATATCCGGGCAGCACATCGGGCTGCTCGCCGGCCTGGTGTACCTGCTG
GTAGCCGGTGCGGCGCGCTATGGCGTGTGGCCGGTGCGTCTGCCGTGGTTGCCCTGGGCCTGCGCGCTGGCCTTCACCGC
AGCGTTGGGCTACGGCCTGCTCGCTGGGTTCGAGGTGCCAGTGCGGCGGGCTTGCGCGATGATCGGCCTGGTGCTGCTCT
GGCGCTTGCGCTTCAAGCATCCGGACCCCTGGTGGGCATGGCTGCTGGCCTTCACCGGAGTGCTGGTGTTCGATCCGCTG
GCCAGCTTGCGGCCGGGGTTCTGGTTATCGTTTGCGGCGGTGGCGATCTTGATGTTCACCTTTGGCGCTCGTCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTGGCGGTCGGCTTGTGTCCGTTGTTGTTGCTATTGGGCT
TGCCGGTCAGTCTCAGTGGGCCATTGGTGAACCTGCTGGCGGTGCCCTGGATCAGCCTGTTGGTGTTGCCGTTGGCACTG
CTCGGCACGGCGTTGTTGCCCGTGCCGTTCATGGGTGAAGGGTTGCTGTGGGTGGCCGGTGGCTTGCTCGATCTGATGTT
CAAGGGGCTGGCGCTGGCTGCCGGGCGAATGCCGGCGTGGATACCTGTTTCGGTCCCGCTCTGGGCCTGGTGCATCGCCG
CTCTCGGGGCTTTTTTGCTGTTGCTGCCCAAGGGCGTACCGCTGCGGGTGCTGGGGTGGCCGATGCTGCTGTTGCTGGTT
TTTCCGCCGCGAGAAAGCGTGCCGCAAGGCCATGCCGAAATCTGGCATCTGGACGTTGGCCAAGGGCTTGCGGTGCTTGT
GCGCACCCGTCGTCATACCCTGCTCTACGATGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGCGAGCGCGTCGTGCTGC
CGACGTTGCGTAAGCTGGGGGTGCCGGCATTGGATCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCC
CGCGCTGTGCACAACGGCCTGGCAACGACGCGGGTGATCAGTGGCGATCCGGGCGCGCTACCTGATGAGCTGCAGGCCGG
AGCATGCGATAGCAGCGAGCGTTGGGAGTGGGATGGGGTCAGCTTCGAGCTGTGGCAATGGTCCGCTGCCCTTGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTCGAGGCTGGCGGCGAGCGCTTGCTGCTGACCGGCGACATCGATAGCCAGGCTGAG
CGCGCCTTGCTCGACGGGCCGCTGGCCTTGCCAATCCAGTGGCTGGCGGCCCCGCATCATGGCAGCCGCAGCTCCTCGTC
GATGACGTTGTTGTCGCGCCTCAAACCGCATTCGGTGCTGATCTCCCGGGGGCAAGGCAATGCGTTCGGTCATCCCCATC
CCCGGGTGATCGCCCGTTACCGACGGCTGGGCATGGCGATCTACGACAGTGCTGAACAGGGCGCCATTCGTCTGCAACTG
GGCGCCTTCGAGCCGCCATTCACCCAGGCCGGGCAGCGGCGGTATTGGCGGGATCCGCCGTCTGCGGGGCTGCGGACCGA
ACATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.732

95.722

0.591