Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WAA16_RS11570 Genome accession   NZ_CP146984
Coordinates   2269511..2270281 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2264511..2275281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS11550 (WAA16_11550) - 2264601..2265422 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  WAA16_RS11555 (WAA16_11555) - 2265448..2266086 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  WAA16_RS11560 (WAA16_11560) glyS 2266253..2268298 (-) 2046 WP_060596664.1 glycine--tRNA ligase subunit beta -
  WAA16_RS11565 (WAA16_11565) glyQ 2268291..2269178 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  WAA16_RS11570 (WAA16_11570) recO 2269511..2270281 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  WAA16_RS11575 (WAA16_11575) - 2270317..2270460 (-) 144 WP_003217288.1 YqzL family protein -
  WAA16_RS11580 (WAA16_11580) era 2270609..2271514 (-) 906 WP_338712056.1 GTPase Era -
  WAA16_RS11585 (WAA16_11585) - 2271507..2271905 (-) 399 WP_034661347.1 cytidine deaminase -
  WAA16_RS11590 (WAA16_11590) - 2272019..2272405 (-) 387 WP_060596662.1 diacylglycerol kinase family protein -
  WAA16_RS11595 (WAA16_11595) ybeY 2272383..2272862 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  WAA16_RS11600 (WAA16_11600) - 2272863..2274950 (-) 2088 WP_060596703.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=945309 WAA16_RS11570 WP_034661344.1 2269511..2270281(-) (recO) [Bacillus pumilus strain S9]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=945309 WAA16_RS11570 WP_034661344.1 2269511..2270281(-) (recO) [Bacillus pumilus strain S9]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGCGTGATGGCAAGAGGTGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTTCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTAATGGGAATGAAGCCTGAACTTGATCAATGTGTCCATTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCTATTAGAGATAACGGCTTCATTTGCCAAAATTGCTTTTCTAAAGATCCTTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758