Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WAA16_RS11040 Genome accession   NZ_CP146984
Coordinates   2179059..2179862 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain S9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2174059..2184862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS11025 (WAA16_11025) - 2176268..2176504 (+) 237 WP_034661240.1 DUF2627 domain-containing protein -
  WAA16_RS11030 (WAA16_11030) - 2176539..2177276 (-) 738 WP_060596816.1 glycerophosphodiester phosphodiesterase -
  WAA16_RS11035 (WAA16_11035) - 2177503..2178603 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  WAA16_RS11040 (WAA16_11040) spo0A 2179059..2179862 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  WAA16_RS11045 (WAA16_11045) spoIVB 2180148..2181425 (-) 1278 WP_034661244.1 SpoIVB peptidase -
  WAA16_RS11050 (WAA16_11050) recN 2181624..2183357 (-) 1734 WP_060596818.1 DNA repair protein RecN Machinery gene
  WAA16_RS11055 (WAA16_11055) argR 2183391..2183840 (-) 450 WP_034661246.1 transcriptional regulator ArgR -
  WAA16_RS11060 (WAA16_11060) - 2184003..2184857 (-) 855 WP_060596819.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=945304 WAA16_RS11040 WP_012010520.1 2179059..2179862(-) (spo0A) [Bacillus pumilus strain S9]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=945304 WAA16_RS11040 WP_012010520.1 2179059..2179862(-) (spo0A) [Bacillus pumilus strain S9]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACACATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGGAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGATATTTATACTTAAGAGAAGCGATTTCGATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACAAAAGTGTTGTACCCAGACATCGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTTGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCGAAACCAACCAATTCTGAGTTTATTGCTATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888