Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WAA16_RS08695 Genome accession   NZ_CP146984
Coordinates   1739478..1739858 (+) Length   126 a.a.
NCBI ID   WP_045210079.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1734478..1744858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS08685 (WAA16_08685) - 1736675..1738027 (+) 1353 WP_338712570.1 IS1182 family transposase -
  WAA16_RS08690 (WAA16_08690) - 1738301..1739209 (+) 909 WP_095285213.1 trypsin-like serine protease -
  WAA16_RS08695 (WAA16_08695) nucA/comI 1739478..1739858 (+) 381 WP_045210079.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  WAA16_RS08700 (WAA16_08700) - 1740006..1740854 (+) 849 WP_066030856.1 STAS domain-containing protein -
  WAA16_RS08705 (WAA16_08705) - 1740888..1741430 (-) 543 WP_034660768.1 IseA DL-endopeptidase inhibitor family protein -
  WAA16_RS08710 (WAA16_08710) - 1741725..1742162 (+) 438 WP_034660769.1 hypothetical protein -
  WAA16_RS08715 (WAA16_08715) lexA 1742210..1742830 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  WAA16_RS08720 (WAA16_08720) yneA 1742990..1743301 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  WAA16_RS08725 (WAA16_08725) - 1743319..1743966 (+) 648 WP_003211322.1 recombinase family protein -
  WAA16_RS08730 (WAA16_08730) - 1744036..1744266 (+) 231 WP_034660771.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13766.45 Da        Isoelectric Point: 8.4984

>NTDB_id=945302 WAA16_RS08695 WP_045210079.1 1739478..1739858(+) (nucA/comI) [Bacillus pumilus strain S9]
MGTLLGGFGEKHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=945302 WAA16_RS08695 WP_045210079.1 1739478..1739858(+) (nucA/comI) [Bacillus pumilus strain S9]
ATGGGCACGTTGTTAGGTGGATTTGGGGAGAAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGCCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACTAAACCTGGCTTTGACCGGGATGAGTGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGTGCGAGTGTTCAATATGTCAGCCCATCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATCAGCGGTTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548