Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFXAC_RS04960 Genome accession   NZ_CP170720
Coordinates   983205..983948 (+) Length   247 a.a.
NCBI ID   WP_003155231.1    Uniprot ID   A7Z316
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 978205..988948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS04925 (ACFXAC_04925) - 978571..978912 (+) 342 WP_003155243.1 YhaI family protein -
  ACFXAC_RS04930 (ACFXAC_04930) - 978909..979520 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -
  ACFXAC_RS04935 (ACFXAC_04935) - 979700..980056 (-) 357 WP_014417330.1 YtxH domain-containing protein -
  ACFXAC_RS04940 (ACFXAC_04940) - 980174..980365 (+) 192 WP_007409223.1 hypothetical protein -
  ACFXAC_RS04945 (ACFXAC_04945) - 980423..980941 (-) 519 WP_007409222.1 tryptophan transporter -
  ACFXAC_RS04950 (ACFXAC_04950) serC 981062..982141 (-) 1080 WP_015417151.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  ACFXAC_RS04955 (ACFXAC_04955) - 982277..982714 (-) 438 WP_007409220.1 HIT family protein -
  ACFXAC_RS04960 (ACFXAC_04960) pptA 983205..983948 (+) 744 WP_003155231.1 ABC transporter ATP-binding protein EcsA Regulator
  ACFXAC_RS04965 (ACFXAC_04965) - 983941..985167 (+) 1227 WP_007409219.1 ABC transporter permease -
  ACFXAC_RS04970 (ACFXAC_04970) - 985210..985914 (+) 705 WP_015417153.1 EcsC family protein -
  ACFXAC_RS04975 (ACFXAC_04975) - 985937..987124 (-) 1188 WP_053573533.1 M20 family metallopeptidase -
  ACFXAC_RS04980 (ACFXAC_04980) - 987194..988579 (-) 1386 WP_053573534.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27724.14 Da        Isoelectric Point: 5.9140

>NTDB_id=945302 ACFXAC_RS04960 WP_003155231.1 983205..983948(+) (pptA) [Bacillus amyloliquefaciens strain JP5006]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDKESYRSQFTY
IPETPVLYEELTLKEHLELTAMAYGLSKETLEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPSLYIIDE
PFLGLDPLAINALLERMDAAKKAGSSVLMSTHILATAERYCDAFIILHNGEVRASGTLEELREQFGMKDAALDDLYIELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=945302 ACFXAC_RS04960 WP_003155231.1 983205..983948(+) (pptA) [Bacillus amyloliquefaciens strain JP5006]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGTTATACGAGAAACCCGGTCTTAAAAAATGTTTCATTCACCCTTGA
GCCGAACCAGATTGTCGGACTCATCGGATTAAACGGCGCGGGCAAAAGCACGACGATCCGGCATATTATCGGGTTAATGG
ACCCGCATAAAGGCTCGATCGAGCTGAACGGCAAGACGTTTTCGGAGGATAAGGAAAGCTACCGCTCGCAATTTACGTAC
ATCCCCGAAACGCCGGTGCTGTATGAAGAACTGACGCTCAAAGAGCATCTGGAGCTGACGGCCATGGCGTACGGCCTTTC
CAAAGAAACGCTTGAAAAAAGGCTTCCTCCGCTTCTGAAAGAATTCAGAATGGAAAAAAGGCTGAAATGGTTTCCCGCTC
ACTTTTCCAAAGGGATGAAACAGAAAGTCATGATCATGTGCGCGTTTCTCGCGGAGCCTTCGCTTTATATCATTGACGAG
CCGTTTCTCGGCCTTGACCCGCTTGCGATCAATGCATTGCTGGAGCGGATGGACGCCGCGAAAAAAGCCGGATCAAGCGT
GCTGATGTCAACGCATATCCTGGCTACGGCAGAGCGCTACTGTGACGCTTTCATTATTTTACATAACGGCGAAGTGCGGG
CAAGCGGCACACTGGAAGAACTGAGAGAGCAGTTCGGCATGAAAGACGCAGCTCTTGATGACTTGTATATCGAACTGACG
AAGGAAGACGCCGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z316

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547