Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WAA16_RS07660 Genome accession   NZ_CP146984
Coordinates   1533043..1533945 (+) Length   300 a.a.
NCBI ID   WP_338712504.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1528043..1538945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS07640 (WAA16_07640) - 1528709..1530445 (+) 1737 WP_066030915.1 glycosyltransferase -
  WAA16_RS07645 (WAA16_07645) - 1530442..1530717 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  WAA16_RS07650 (WAA16_07650) sucC 1530894..1532054 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  WAA16_RS07655 (WAA16_07655) sucD 1532077..1532979 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  WAA16_RS07660 (WAA16_07660) dprA 1533043..1533945 (+) 903 WP_338712504.1 DNA-processing protein DprA Machinery gene
  WAA16_RS07665 (WAA16_07665) topA 1534139..1536214 (+) 2076 WP_060596250.1 type I DNA topoisomerase -
  WAA16_RS07670 (WAA16_07670) trmFO 1536285..1537589 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WAA16_RS07675 (WAA16_07675) xerC 1537652..1538569 (+) 918 WP_060596252.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34058.31 Da        Isoelectric Point: 8.2720

>NTDB_id=945298 WAA16_RS07660 WP_338712504.1 1533043..1533945(+) (dprA) [Bacillus pumilus strain S9]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETQHFKQDQSLQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=945298 WAA16_RS07660 WP_338712504.1 1533043..1533945(+) (dprA) [Bacillus pumilus strain S9]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACAACATTTCAAACAGGATCAATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATACCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATTCGGAATAAAGGGAAAACCATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTGAAACCAGAAAAGTGGCATT
TCCCAATGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACAGCGTATCAAGCACTTGAGCAAGGTAAAGAGGTATTTGCGGTTGCAGGATCTATCTTTGATCCTAATTCCACAGG
ACCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387