Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACFXAC_RS03770 Genome accession   NZ_CP170720
Coordinates   760507..761223 (+) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 755507..766223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS03740 (ACFXAC_03740) - 755687..756064 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  ACFXAC_RS03745 (ACFXAC_03745) - 756074..756505 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  ACFXAC_RS03750 (ACFXAC_03750) - 756521..756763 (-) 243 WP_003155595.1 spore germination protein -
  ACFXAC_RS03755 (ACFXAC_03755) - 756778..757038 (-) 261 WP_014417185.1 spore germination protein -
  ACFXAC_RS03760 (ACFXAC_03760) treP 757309..758724 (+) 1416 WP_053573582.1 PTS system trehalose-specific EIIBC component -
  ACFXAC_RS03765 (ACFXAC_03765) treC 758800..760485 (+) 1686 WP_053573583.1 alpha,alpha-phosphotrehalase -
  ACFXAC_RS03770 (ACFXAC_03770) treR 760507..761223 (+) 717 WP_053573584.1 trehalose operon repressor Regulator
  ACFXAC_RS03775 (ACFXAC_03775) - 761356..762021 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  ACFXAC_RS03780 (ACFXAC_03780) - 762057..762818 (-) 762 WP_007408500.1 YibE/F family protein -
  ACFXAC_RS03785 (ACFXAC_03785) - 762815..763954 (-) 1140 WP_053573585.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=945294 ACFXAC_RS03770 WP_053573584.1 760507..761223(+) (treR) [Bacillus amyloliquefaciens strain JP5006]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=945294 ACFXAC_RS03770 WP_053573584.1 760507..761223(+) (treR) [Bacillus amyloliquefaciens strain JP5006]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTACTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424