Detailed information NTG0945294

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WAA16_RS06420
• Genome accession: NZ_CP146984
• Coordinates: 1291679..1293781 (-)
• Length: 700 a.a.
• NCBI ID: WP_106156764.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain S9
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1286679..1298781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAA16_RS06395 (WAA16_06395)	-	1287267..1287509 (+)	243	WP_034662891.1	aspartyl-phosphate phosphatase Spo0E family protein	-
WAA16_RS06400 (WAA16_06400)	-	1287556..1289061 (-)	1506	WP_060596119.1	ATP-binding protein	-
WAA16_RS06405 (WAA16_06405)	-	1289267..1289722 (+)	456	WP_034662884.1	MarR family transcriptional regulator	-
WAA16_RS06410 (WAA16_06410)	motB	1289752..1290516 (-)	765	WP_060596120.1	flagellar motor protein MotB	-
WAA16_RS06415 (WAA16_06415)	motA	1290509..1291303 (-)	795	WP_034662877.1	flagellar motor stator protein MotA	-
WAA16_RS06420 (WAA16_06420)	clpC	1291679..1293781 (-)	2103	WP_106156764.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
WAA16_RS06425 (WAA16_06425)	-	1294025..1295068 (+)	1044	WP_106036740.1	hypothetical protein	-
WAA16_RS06430 (WAA16_06430)	queC	1295344..1296000 (+)	657	WP_024424683.1	7-cyano-7-deazaguanine synthase QueC	-
WAA16_RS06435 (WAA16_06435)	queD	1296001..1296441 (+)	441	WP_060596123.1	6-carboxytetrahydropterin synthase QueD	-
WAA16_RS06440 (WAA16_06440)	queE	1296434..1297165 (+)	732	WP_034662862.1	7-carboxy-7-deazaguanine synthase QueE	-
WAA16_RS06445 (WAA16_06445)	queF	1297181..1297678 (+)	498	WP_003211403.1	preQ(1) synthase	-
WAA16_RS06450 (WAA16_06450)	-	1297949..1298167 (+)	219	WP_034662856.1	hypothetical protein	-
WAA16_RS06455 (WAA16_06455)	-	1298291..1298479 (-)	189	WP_003211747.1	DUF2187 family protein	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 78050.67 Da
• Isoelectric Point: 5.0839

>NTDB_id=945294 WAA16_RS06420 WP_106156764.1 1291679..1293781(-) (clpC) [Bacillus pumilus strain S9]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAVEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLREIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEMDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=945294 WAA16_RS06420 WP_106156764.1 1291679..1293781(-) (clpC) [Bacillus pumilus strain S9]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAATTGCAAAGCCGTAAAAATATTATCCT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGACGCTTCCAGCCCGTCATTGTGGATGAGCCAACACAAGATGAAGCGGTCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGAGAGAAATTGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATGGACGTCCGCTTAAAAGCACGAGTGATCGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATCGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.369	100	0.594
clpE	Streptococcus mutans UA159	57.32	100	0.593
clpE	Streptococcus pneumoniae Rx1	55.387	100	0.573
clpE	Streptococcus pneumoniae D39	55.387	100	0.573
clpE	Streptococcus pneumoniae R6	55.387	100	0.573
clpE	Streptococcus pneumoniae TIGR4	55.387	100	0.573
clpC	Bacillus subtilis subsp. subtilis str. 168	53.433	95.714	0.511
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.068	92.571	0.436
clpC	Streptococcus thermophilus LMD-9	45.595	92.429	0.421
clpC	Streptococcus thermophilus LMG 18311	45.44	92.429	0.42
clpC	Streptococcus mutans UA159	43.865	93.143	0.409
clpC	Streptococcus pneumoniae TIGR4	44.795	90.571	0.406
clpC	Streptococcus pneumoniae Rx1	44.992	89.857	0.404
clpC	Streptococcus pneumoniae D39	44.992	89.857	0.404