Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFXAC_RS02470 Genome accession   NZ_CP170720
Coordinates   503731..504909 (+) Length   392 a.a.
NCBI ID   WP_053573663.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 498731..509909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS02440 (ACFXAC_02440) - 500070..500519 (-) 450 WP_053573666.1 hypothetical protein -
  ACFXAC_RS02445 (ACFXAC_02445) - 501117..501275 (+) 159 Protein_443 hypothetical protein -
  ACFXAC_RS02450 (ACFXAC_02450) - 501346..501612 (-) 267 WP_199910799.1 TQO small subunit DoxD -
  ACFXAC_RS02455 (ACFXAC_02455) - 502074..502577 (-) 504 WP_004393007.1 Rrf2 family transcriptional regulator -
  ACFXAC_RS02460 (ACFXAC_02460) - 502774..503415 (+) 642 WP_053573664.1 FMN-dependent NADH-azoreductase -
  ACFXAC_RS02465 (ACFXAC_02465) - 503424..503570 (+) 147 WP_108702392.1 NAD-dependent epimerase/dehydratase family protein -
  ACFXAC_RS02470 (ACFXAC_02470) rapC 503731..504909 (+) 1179 WP_053573663.1 RapH N-terminal domain-containing protein Regulator
  ACFXAC_RS02475 (ACFXAC_02475) - 505090..506367 (+) 1278 WP_053573662.1 hypothetical protein -
  ACFXAC_RS02480 (ACFXAC_02480) - 506829..506984 (+) 156 Protein_450 tetratricopeptide repeat protein -
  ACFXAC_RS02485 (ACFXAC_02485) - 506941..507069 (+) 129 WP_223204396.1 hypothetical protein -
  ACFXAC_RS02490 (ACFXAC_02490) - 507026..507144 (+) 119 Protein_452 IS1595 family transposase -
  ACFXAC_RS02495 (ACFXAC_02495) - 507851..508217 (+) 367 Protein_453 BCCT family transporter -
  ACFXAC_RS02500 (ACFXAC_02500) - 508256..509659 (+) 1404 WP_021495073.1 MFS transporter -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46618.90 Da        Isoelectric Point: 4.7518

>NTDB_id=945290 ACFXAC_RS02470 WP_053573663.1 503731..504909(+) (rapC) [Bacillus amyloliquefaciens strain JP5006]
MHRILLDENRKIPYDLVTQKLNDWYTLIKNDQVEQAEHIRKEVEKELVNLEENQDALLYYQLLEFRHEIMLSYMESKRID
DLNSAYETIKEMEEQGQLTGMLEYYFFFFTGMYEFRRKELTTAISAYRIAETKLSEVEDEIEKAEFFFKVSYVYYYMKQT
YFSMNYASRALKIFQKFDEYAVQTLRCQFIVAGNLIDSLEFERALQQFLNALEIAEYTKIPHLIGMSHMNIGICYEELKD
YNNASIHLGLSIDIFEKSKHSFLTKALFAMAHVYAKKHNFDIAYNYFIKGRSEAENRNDKEYIAKFKILEGLYFSNGEYE
LIDEAFSYLADRKMFADMENFATEIGDYFYGEGELELSNKFYRMSIEARRKIKRGEIINEDQPNSIGSNGVE

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=945290 ACFXAC_RS02470 WP_053573663.1 503731..504909(+) (rapC) [Bacillus amyloliquefaciens strain JP5006]
TTGCACCGGATTCTCTTGGATGAAAACAGAAAAATTCCGTACGACCTAGTCACTCAAAAATTGAATGATTGGTATACTCT
TATTAAAAATGATCAAGTTGAACAGGCTGAGCATATAAGAAAAGAAGTGGAAAAAGAATTAGTGAATCTGGAAGAAAATC
AAGACGCTTTGTTATACTATCAATTGCTTGAATTCCGACACGAGATAATGTTGAGTTATATGGAATCGAAAAGGATTGAT
GATTTAAATAGTGCGTATGAAACAATAAAAGAAATGGAAGAGCAAGGGCAATTAACGGGTATGCTTGAGTATTACTTTTT
CTTTTTTACAGGTATGTACGAGTTCAGACGTAAAGAATTAACAACGGCAATAAGTGCTTATAGGATTGCTGAAACAAAAC
TTTCTGAAGTGGAAGATGAAATAGAAAAAGCTGAGTTTTTTTTCAAAGTTTCATACGTTTATTATTATATGAAACAGACT
TACTTTTCGATGAATTATGCTAGTCGTGCTTTGAAAATATTTCAGAAGTTCGATGAATACGCTGTTCAAACATTGCGCTG
TCAGTTTATAGTAGCAGGAAATTTGATAGATTCTTTGGAATTTGAAAGAGCGTTGCAACAATTTTTGAATGCATTGGAAA
TTGCAGAGTACACCAAAATTCCTCATCTGATTGGTATGTCTCATATGAACATTGGGATTTGTTATGAAGAGTTAAAGGAT
TATAATAATGCTTCTATCCATTTGGGATTGTCGATAGATATTTTTGAAAAATCTAAACATAGTTTTTTGACAAAAGCTTT
GTTTGCTATGGCTCACGTATATGCCAAAAAACATAATTTTGATATAGCTTATAATTATTTCATTAAAGGACGAAGCGAAG
CAGAGAATAGGAATGATAAAGAATACATTGCAAAATTTAAAATTTTAGAAGGACTTTATTTTTCAAATGGTGAATATGAA
TTAATTGATGAAGCATTTTCTTACCTTGCTGACAGAAAAATGTTTGCTGACATGGAGAATTTTGCAACTGAAATAGGCGA
TTATTTTTATGGAGAAGGGGAATTAGAACTTTCAAACAAATTTTATCGTATGAGTATTGAAGCAAGACGAAAAATCAAAA
GAGGGGAGATTATTAATGAAGATCAGCCGAATTCTATTGGGAGTAATGGTGTTGAGTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(11-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.666

96.173

0.362