Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACFXAC_RS02080 Genome accession   NZ_CP170720
Coordinates   441245..441679 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 436245..446679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS02050 (ACFXAC_02050) - 436916..437776 (+) 861 WP_053573720.1 SDR family oxidoreductase -
  ACFXAC_RS02055 (ACFXAC_02055) - 437789..438292 (+) 504 WP_053573719.1 D-lyxose/D-mannose family sugar isomerase -
  ACFXAC_RS02060 (ACFXAC_02060) - 438380..439003 (+) 624 WP_039062632.1 GNAT family N-acetyltransferase -
  ACFXAC_RS02065 (ACFXAC_02065) - 439010..439432 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACFXAC_RS02070 (ACFXAC_02070) - 439932..440741 (+) 810 WP_015416841.1 lipid II flippase Amj family protein -
  ACFXAC_RS02075 (ACFXAC_02075) - 440779..441069 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  ACFXAC_RS02080 (ACFXAC_02080) lrpC 441245..441679 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  ACFXAC_RS02085 (ACFXAC_02085) - 441743..443929 (+) 2187 WP_053573740.1 DNA topoisomerase III -
  ACFXAC_RS02090 (ACFXAC_02090) - 444163..445248 (+) 1086 WP_053573718.1 hypothetical protein -
  ACFXAC_RS02095 (ACFXAC_02095) - 445229..446077 (+) 849 WP_041482102.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=945289 ACFXAC_RS02080 WP_007410180.1 441245..441679(+) (lrpC) [Bacillus amyloliquefaciens strain JP5006]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=945289 ACFXAC_RS02080 WP_007410180.1 441245..441679(+) (lrpC) [Bacillus amyloliquefaciens strain JP5006]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792