Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WAA16_RS05065 Genome accession   NZ_CP146984
Coordinates   1036471..1037421 (+) Length   316 a.a.
NCBI ID   WP_060595944.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031471..1042421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS05045 (WAA16_05045) - 1032697..1033179 (+) 483 WP_060595940.1 hypothetical protein -
  WAA16_RS05050 (WAA16_05050) - 1033212..1034651 (-) 1440 WP_060595941.1 PLP-dependent aminotransferase family protein -
  WAA16_RS05055 (WAA16_05055) - 1034796..1035965 (+) 1170 WP_060595942.1 MFS transporter -
  WAA16_RS05060 (WAA16_05060) - 1036030..1036305 (+) 276 WP_060595943.1 barstar family protein -
  WAA16_RS05065 (WAA16_05065) ceuB 1036471..1037421 (+) 951 WP_060595944.1 ABC transporter permease Machinery gene
  WAA16_RS05070 (WAA16_05070) - 1037414..1038364 (+) 951 WP_044140714.1 iron chelate uptake ABC transporter family permease subunit -
  WAA16_RS05075 (WAA16_05075) - 1038355..1039113 (+) 759 WP_060595945.1 ATP-binding cassette domain-containing protein -
  WAA16_RS05080 (WAA16_05080) - 1039136..1040080 (+) 945 WP_034663500.1 siderophore ABC transporter substrate-binding protein -
  WAA16_RS05085 (WAA16_05085) - 1040221..1041177 (+) 957 WP_338712395.1 LCP family protein -
  WAA16_RS05090 (WAA16_05090) - 1041246..1041608 (-) 363 WP_060595947.1 hypothetical protein -
  WAA16_RS05095 (WAA16_05095) - 1041765..1042382 (+) 618 WP_034663493.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34895.26 Da        Isoelectric Point: 9.7476

>NTDB_id=945283 WAA16_RS05065 WP_060595944.1 1036471..1037421(+) (ceuB) [Bacillus pumilus strain S9]
MKLYQLSLLFVCLACVSLFVGVQDLSILQMFHLTDEQLHTLVSSRIPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIVGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=945283 WAA16_RS05065 WP_060595944.1 1036471..1037421(+) (ceuB) [Bacillus pumilus strain S9]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGATGTTTCATTTAACAGATGAACAATTACATACGTTAGTTTCAAGTCGCATCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATC
CAAAACGTATCTGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGTATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGAATG
TTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCGTCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.159

95.253

0.497