Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WAA16_RS05035 Genome accession   NZ_CP146984
Coordinates   1030489..1031067 (+) Length   192 a.a.
NCBI ID   WP_060595938.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025489..1036067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS05015 (WAA16_05015) - 1025981..1027276 (-) 1296 WP_034663533.1 globin-coupled sensor protein -
  WAA16_RS05020 (WAA16_05020) - 1027368..1028900 (-) 1533 WP_338712394.1 FAD-dependent oxidoreductase -
  WAA16_RS05025 (WAA16_05025) - 1029046..1029906 (+) 861 WP_060595936.1 SDR family oxidoreductase -
  WAA16_RS05030 (WAA16_05030) - 1029963..1030199 (-) 237 WP_060595937.1 IDEAL domain-containing protein -
  WAA16_RS05035 (WAA16_05035) comK 1030489..1031067 (+) 579 WP_060595938.1 competence protein ComK Regulator
  WAA16_RS05040 (WAA16_05040) - 1031236..1032342 (+) 1107 WP_060595939.1 D-TA family PLP-dependent enzyme -
  WAA16_RS05045 (WAA16_05045) - 1032697..1033179 (+) 483 WP_060595940.1 hypothetical protein -
  WAA16_RS05050 (WAA16_05050) - 1033212..1034651 (-) 1440 WP_060595941.1 PLP-dependent aminotransferase family protein -
  WAA16_RS05055 (WAA16_05055) - 1034796..1035965 (+) 1170 WP_060595942.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.39 Da        Isoelectric Point: 7.8904

>NTDB_id=945282 WAA16_RS05035 WP_060595938.1 1030489..1031067(+) (comK) [Bacillus pumilus strain S9]
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVELDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=945282 WAA16_RS05035 WP_060595938.1 1030489..1031067(+) (comK) [Bacillus pumilus strain S9]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GTTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATTTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCGAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615