Detailed information NTG0945277

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFXAC_RS01390
• Genome accession: NZ_CP170720
• Coordinates: 279376..280497 (+)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5006
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 274376..285497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAC_RS01370 (ACFXAC_01370)	-	274685..275680 (-)	996	WP_015416740.1	DUF5105 domain-containing protein	-
ACFXAC_RS01375 (ACFXAC_01375)	-	275807..277207 (+)	1401	WP_015416741.1	YcdB/YcdC domain-containing protein	-
ACFXAC_RS01380 (ACFXAC_01380)	-	277408..278766 (+)	1359	WP_053573762.1	YcdB/YcdC domain-containing protein	-
ACFXAC_RS01385 (ACFXAC_01385)	-	278763..279266 (-)	504	WP_015416743.1	M15 family metallopeptidase	-
ACFXAC_RS01390 (ACFXAC_01390)	rapF	279376..280497 (+)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
ACFXAC_RS01395 (ACFXAC_01395)	-	280613..281392 (+)	780	WP_053573761.1	glucose 1-dehydrogenase	-
ACFXAC_RS01400 (ACFXAC_01400)	-	281476..283155 (+)	1680	WP_039252865.1	alpha-glucosidase	-
ACFXAC_RS01405 (ACFXAC_01405)	-	283340..284299 (+)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
ACFXAC_RS01410 (ACFXAC_01410)	-	284354..285049 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=945277 ACFXAC_RS01390 WP_033575143.1 279376..280497(+) (rapF) [Bacillus amyloliquefaciens strain JP5006]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=945277 ACFXAC_RS01390 WP_033575143.1 279376..280497(+) (rapF) [Bacillus amyloliquefaciens strain JP5006]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGATTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402