Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WAA16_RS00255 Genome accession   NZ_CP146984
Coordinates   47054..47344 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42054..52344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS00215 (WAA16_00215) - 42089..42418 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  WAA16_RS00220 (WAA16_00220) - 42431..42871 (+) 441 WP_034665673.1 DUF327 family protein -
  WAA16_RS00225 (WAA16_00225) holB 42883..43872 (+) 990 WP_106037503.1 DNA polymerase III subunit delta' -
  WAA16_RS00230 (WAA16_00230) - 43875..44702 (+) 828 WP_012008643.1 stage 0 sporulation family protein -
  WAA16_RS00235 (WAA16_00235) yabA 44717..45070 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  WAA16_RS00240 (WAA16_00240) - 45126..45869 (+) 744 WP_338712256.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  WAA16_RS00245 (WAA16_00245) - 45856..46152 (+) 297 WP_106031938.1 GIY-YIG nuclease family protein -
  WAA16_RS00250 (WAA16_00250) rsmI 46130..47008 (+) 879 WP_106037505.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  WAA16_RS00255 (WAA16_00255) abrB 47054..47344 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WAA16_RS00260 (WAA16_00260) metG 47865..49862 (+) 1998 WP_106071956.1 methionine--tRNA ligase -
  WAA16_RS00265 (WAA16_00265) - 49945..50712 (+) 768 WP_034665688.1 TatD family hydrolase -
  WAA16_RS00270 (WAA16_00270) - 50957..52159 (+) 1203 WP_034665691.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=945273 WAA16_RS00255 WP_087975202.1 47054..47344(-) (abrB) [Bacillus pumilus strain S9]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=945273 WAA16_RS00255 WP_087975202.1 47054..47344(-) (abrB) [Bacillus pumilus strain S9]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938