Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACFXAC_RS00180 Genome accession   NZ_CP170720
Coordinates   29792..30022 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24792..35022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS00150 (ACFXAC_00150) ridA 24980..25360 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ACFXAC_RS00155 (ACFXAC_00155) spoVG 25556..25849 (+) 294 WP_004264660.1 septation regulator SpoVG -
  ACFXAC_RS00160 (ACFXAC_00160) glmU 26041..27411 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACFXAC_RS00165 (ACFXAC_00165) - 27433..28386 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  ACFXAC_RS00170 (ACFXAC_00170) - 28471..29079 (+) 609 WP_014416724.1 50S ribosomal protein L25/general stress protein Ctc -
  ACFXAC_RS00175 (ACFXAC_00175) pth 29164..29730 (+) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  ACFXAC_RS00180 (ACFXAC_00180) subA/fin 29792..30022 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  ACFXAC_RS00185 (ACFXAC_00185) mfd 30092..33625 (+) 3534 WP_053573821.1 transcription-repair coupling factor -
  ACFXAC_RS00190 (ACFXAC_00190) spoVT 33762..34298 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=945271 ACFXAC_RS00180 WP_004264650.1 29792..30022(+) (subA/fin) [Bacillus amyloliquefaciens strain JP5006]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=945271 ACFXAC_RS00180 WP_004264650.1 29792..30022(+) (subA/fin) [Bacillus amyloliquefaciens strain JP5006]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868