Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFXAC_RS00095 Genome accession   NZ_CP170720
Coordinates   14548..14838 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 9548..19838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS00055 (ACFXAC_00055) darA 9565..9894 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  ACFXAC_RS00060 (ACFXAC_00060) - 9907..10347 (+) 441 WP_004264730.1 YaaR family protein -
  ACFXAC_RS00065 (ACFXAC_00065) holB 10359..11348 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  ACFXAC_RS00070 (ACFXAC_00070) yaaT 11351..12178 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  ACFXAC_RS00075 (ACFXAC_00075) yabA 12193..12552 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACFXAC_RS00080 (ACFXAC_00080) - 12613..13356 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACFXAC_RS00085 (ACFXAC_00085) - 13343..13642 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACFXAC_RS00090 (ACFXAC_00090) rsmI 13617..14498 (+) 882 WP_053573815.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACFXAC_RS00095 (ACFXAC_00095) abrB 14548..14838 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACFXAC_RS00100 (ACFXAC_00100) metG 15322..17313 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  ACFXAC_RS00105 (ACFXAC_00105) - 17390..18157 (+) 768 WP_053573817.1 TatD family hydrolase -
  ACFXAC_RS00110 (ACFXAC_00110) - 18292..19617 (+) 1326 WP_108702423.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=945270 ACFXAC_RS00095 WP_169510469.1 14548..14838(-) (abrB) [Bacillus amyloliquefaciens strain JP5006]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=945270 ACFXAC_RS00095 WP_169510469.1 14548..14838(-) (abrB) [Bacillus amyloliquefaciens strain JP5006]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979