Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACFW98_RS19895 Genome accession   NZ_CP170719
Coordinates   4065056..4065727 (+) Length   223 a.a.
NCBI ID   WP_015417275.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4060056..4070727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS19880 (ACFW98_19880) - 4060863..4061861 (+) 999 WP_032871248.1 LacI family DNA-binding transcriptional regulator -
  ACFW98_RS19885 (ACFW98_19885) - 4061937..4063382 (+) 1446 WP_032871250.1 tagaturonate reductase -
  ACFW98_RS19890 (ACFW98_19890) - 4063379..4064872 (+) 1494 WP_032871252.1 UxaA family hydrolase -
  ACFW98_RS19895 (ACFW98_19895) scnR 4065056..4065727 (+) 672 WP_015417275.1 response regulator transcription factor Regulator
  ACFW98_RS19900 (ACFW98_19900) - 4065724..4066932 (+) 1209 WP_395096659.1 histidine kinase dimerization/phospho-acceptor domain-containing protein -
  ACFW98_RS19905 (ACFW98_19905) - 4066925..4067080 (+) 156 WP_395096661.1 ATP-binding protein -
  ACFW98_RS19910 (ACFW98_19910) - 4067200..4067382 (+) 183 Protein_3851 ATP-binding cassette domain-containing protein -
  ACFW98_RS19915 (ACFW98_19915) - 4067542..4067733 (+) 192 WP_015417277.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26364.65 Da        Isoelectric Point: 6.6664

>NTDB_id=945268 ACFW98_RS19895 WP_015417275.1 4065056..4065727(+) (scnR) [Bacillus amyloliquefaciens strain JP5008]
MNNILYIEDDQEIGQFVKGDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=945268 ACFW98_RS19895 WP_015417275.1 4065056..4065727(+) (scnR) [Bacillus amyloliquefaciens strain JP5008]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAAGGTGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGACGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACAA
TCAGAGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363