Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R9B17_RS06620 Genome accession   NZ_AP028399
Coordinates   1290371..1291339 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285371..1296339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS06595 (B11515_13060) cdsA 1286282..1287007 (-) 726 WP_317739054.1 phosphatidate cytidylyltransferase -
  R9B17_RS06600 (B11515_13070) - 1287016..1287354 (-) 339 WP_002852397.1 hypothetical protein -
  R9B17_RS06605 (B11515_13080) - 1287356..1288663 (-) 1308 WP_032587646.1 NFACT RNA binding domain-containing protein -
  R9B17_RS06610 (B11515_13090) mobA 1288725..1289300 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R9B17_RS06615 (B11515_13100) pldA 1289297..1290285 (+) 989 Protein_1281 phospholipase A -
  R9B17_RS06620 (B11515_13110) ceuB 1290371..1291339 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  R9B17_RS06625 (B11515_13120) ceuC 1291332..1292270 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  R9B17_RS06630 (B11515_13130) ceuD 1292267..1293022 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  R9B17_RS06635 (B11515_13140) ceuB 1293035..1294027 (+) 993 WP_032586806.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R9B17_RS06645 (B11515_13150) - 1294253..1294807 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=94525 R9B17_RS06620 WP_002874446.1 1290371..1291339(+) (ceuB) [Campylobacter jejuni strain BCH-11515]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=94525 R9B17_RS06620 WP_002874446.1 1290371..1291339(+) (ceuB) [Campylobacter jejuni strain BCH-11515]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTATTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994