Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACFW98_RS17555 Genome accession   NZ_CP170719
Coordinates   3625717..3626433 (+) Length   238 a.a.
NCBI ID   WP_032870678.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620717..3631433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS17525 (ACFW98_17525) - 3620898..3621275 (+) 378 WP_395096577.1 DUF1992 domain-containing protein -
  ACFW98_RS17530 (ACFW98_17530) - 3621285..3621716 (-) 432 WP_032870672.1 Hsp20/alpha crystallin family protein -
  ACFW98_RS17535 (ACFW98_17535) - 3621732..3621974 (-) 243 WP_003155595.1 spore germination protein -
  ACFW98_RS17540 (ACFW98_17540) - 3621989..3622249 (-) 261 WP_007408496.1 spore germination protein -
  ACFW98_RS17545 (ACFW98_17545) treP 3622519..3623934 (+) 1416 WP_032870674.1 PTS system trehalose-specific EIIBC component -
  ACFW98_RS17550 (ACFW98_17550) treC 3624010..3625695 (+) 1686 WP_032870676.1 alpha,alpha-phosphotrehalase -
  ACFW98_RS17555 (ACFW98_17555) treR 3625717..3626433 (+) 717 WP_032870678.1 trehalose operon repressor Regulator
  ACFW98_RS17560 (ACFW98_17560) - 3626566..3627231 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  ACFW98_RS17565 (ACFW98_17565) - 3627267..3628028 (-) 762 WP_007408500.1 YibE/F family protein -
  ACFW98_RS17570 (ACFW98_17570) - 3628025..3629164 (-) 1140 WP_395096578.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27421.44 Da        Isoelectric Point: 7.8721

>NTDB_id=945244 ACFW98_RS17555 WP_032870678.1 3625717..3626433(+) (treR) [Bacillus amyloliquefaciens strain JP5008]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVTLLTKAICEGS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSQMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=945244 ACFW98_RS17555 WP_032870678.1 3625717..3626433(+) (treR) [Bacillus amyloliquefaciens strain JP5008]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGACTTTATTGACGAAGGCGATTTGCGAAGGTTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCAAATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416