Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | WAX88_RS08835 | Genome accession | NZ_CP146973 |
| Coordinates | 2005689..2005949 (-) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain WMD-P3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2000689..2010949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WAX88_RS08810 (WAX88_08810) | yfbR | 2001941..2002525 (+) | 585 | WP_065171103.1 | 5'-deoxynucleotidase | - |
| WAX88_RS08815 (WAX88_08815) | - | 2002525..2003853 (+) | 1329 | WP_341508640.1 | anti-phage deoxyguanosine triphosphatase | - |
| WAX88_RS08820 (WAX88_08820) | - | 2003995..2004612 (-) | 618 | WP_341508641.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| WAX88_RS08825 (WAX88_08825) | rrtA | 2004622..2005179 (+) | 558 | WP_106339069.1 | rhombosortase | - |
| WAX88_RS08830 (WAX88_08830) | - | 2005266..2005604 (+) | 339 | WP_068947005.1 | DUF1971 domain-containing protein | - |
| WAX88_RS08835 (WAX88_08835) | comEA | 2005689..2005949 (-) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| WAX88_RS08840 (WAX88_08840) | ppiD | 2006139..2008037 (-) | 1899 | WP_106339073.1 | peptidylprolyl isomerase | - |
| WAX88_RS08845 (WAX88_08845) | hupB | 2008388..2008660 (-) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=945238 WAX88_RS08835 WP_370466065.1 2005689..2005949(-) (comEA) [Photobacterium damselae subsp. damselae strain WMD-P3]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=945238 WAX88_RS08835 WP_370466065.1 2005689..2005949(-) (comEA) [Photobacterium damselae subsp. damselae strain WMD-P3]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGCAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGTATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTATAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGCAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGTATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |