Detailed information NTG0945228

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFW98_RS15155
• Genome accession: NZ_CP170719
• Coordinates: 3134658..3135779 (+)
• Length: 373 a.a.
• NCBI ID: WP_007409040.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5008
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3129658..3140779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW98_RS15135 (ACFW98_15135)	-	3129967..3130962 (-)	996	WP_160222825.1	DUF5105 domain-containing protein	-
ACFW98_RS15140 (ACFW98_15140)	-	3131089..3132489 (+)	1401	WP_160222826.1	YcdB/YcdC domain-containing protein	-
ACFW98_RS15145 (ACFW98_15145)	-	3132690..3134048 (+)	1359	WP_160222827.1	YcdB/YcdC domain-containing protein	-
ACFW98_RS15150 (ACFW98_15150)	-	3134045..3134548 (-)	504	WP_007409039.1	M15 family metallopeptidase	-
ACFW98_RS15155 (ACFW98_15155)	rapF	3134658..3135779 (+)	1122	WP_007409040.1	tetratricopeptide repeat protein	Regulator
ACFW98_RS15160 (ACFW98_15160)	-	3135895..3136674 (+)	780	WP_007409041.1	glucose 1-dehydrogenase	-
ACFW98_RS15165 (ACFW98_15165)	-	3136758..3138437 (+)	1680	WP_160222828.1	alpha-glucosidase	-
ACFW98_RS15170 (ACFW98_15170)	-	3138623..3139582 (+)	960	WP_395096548.1	metal ABC transporter substrate-binding protein	-
ACFW98_RS15175 (ACFW98_15175)	-	3139637..3140332 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=945228 ACFW98_RS15155 WP_007409040.1 3134658..3135779(+) (rapF) [Bacillus amyloliquefaciens strain JP5008]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=945228 ACFW98_RS15155 WP_007409040.1 3134658..3135779(+) (rapF) [Bacillus amyloliquefaciens strain JP5008]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCACATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402