Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAX86_RS13480 Genome accession   NZ_CP146970
Coordinates   2949019..2949567 (-) Length   182 a.a.
NCBI ID   WP_044174221.1    Uniprot ID   A0A1Q9H2L1
Organism   Photobacterium damselae subsp. damselae strain WMD-P2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2944019..2954567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX86_RS13460 (WAX86_13460) - 2944364..2944687 (-) 324 WP_065170863.1 hypothetical protein -
  WAX86_RS13465 (WAX86_13465) pilO 2944680..2945315 (-) 636 WP_065170864.1 type 4a pilus biogenesis protein PilO -
  WAX86_RS13470 (WAX86_13470) - 2945312..2946763 (-) 1452 WP_068968327.1 PilN domain-containing protein -
  WAX86_RS13475 (WAX86_13475) csrD 2946928..2948868 (-) 1941 WP_341488909.1 RNase E specificity factor CsrD -
  WAX86_RS13480 (WAX86_13480) ssb 2949019..2949567 (-) 549 WP_044174221.1 single-stranded DNA-binding protein Machinery gene
  WAX86_RS13485 (WAX86_13485) uvrA 2949834..2952659 (+) 2826 WP_341488910.1 excinuclease ABC subunit UvrA -
  WAX86_RS13490 (WAX86_13490) - 2952812..2954563 (+) 1752 WP_115426285.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20101.25 Da        Isoelectric Point: 4.9059

>NTDB_id=945222 WAX86_RS13480 WP_044174221.1 2949019..2949567(-) (ssb) [Photobacterium damselae subsp. damselae strain WMD-P2]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=945222 WAX86_RS13480 WP_044174221.1 2949019..2949567(-) (ssb) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9H2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.473

100

0.775
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.588
  ssb Neisseria meningitidis MC58

46.739

100

0.473
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.473