Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACFW98_RS13945 Genome accession   NZ_CP170719
Coordinates   2885047..2885277 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880047..2890277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS13915 (ACFW98_13915) ridA 2880235..2880615 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ACFW98_RS13920 (ACFW98_13920) spoVG 2880811..2881104 (+) 294 WP_004264660.1 septation regulator SpoVG -
  ACFW98_RS13925 (ACFW98_13925) glmU 2881296..2882666 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACFW98_RS13930 (ACFW98_13930) - 2882688..2883641 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  ACFW98_RS13935 (ACFW98_13935) - 2883726..2884334 (+) 609 WP_011996173.1 50S ribosomal protein L25/general stress protein Ctc -
  ACFW98_RS13940 (ACFW98_13940) pth 2884419..2884985 (+) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  ACFW98_RS13945 (ACFW98_13945) subA/fin 2885047..2885277 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  ACFW98_RS13950 (ACFW98_13950) mfd 2885347..2888880 (+) 3534 WP_395096529.1 transcription-repair coupling factor -
  ACFW98_RS13955 (ACFW98_13955) spoVT 2889017..2889553 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=945222 ACFW98_RS13945 WP_004264650.1 2885047..2885277(+) (subA/fin) [Bacillus amyloliquefaciens strain JP5008]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=945222 ACFW98_RS13945 WP_004264650.1 2885047..2885277(+) (subA/fin) [Bacillus amyloliquefaciens strain JP5008]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868