Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFW98_RS11455 Genome accession   NZ_CP170719
Coordinates   2396201..2397331 (-) Length   376 a.a.
NCBI ID   WP_007407584.1    Uniprot ID   A7Z9N9
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2391201..2402331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS11425 (ACFW98_11425) - 2392042..2392446 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  ACFW98_RS11430 (ACFW98_11430) ureC 2392588..2394297 (-) 1710 WP_032869481.1 urease subunit alpha -
  ACFW98_RS11435 (ACFW98_11435) ureB 2394294..2394668 (-) 375 WP_003151199.1 urease subunit beta -
  ACFW98_RS11440 (ACFW98_11440) ureA 2394665..2394982 (-) 318 WP_007407581.1 urease subunit gamma -
  ACFW98_RS11445 (ACFW98_11445) - 2395336..2395524 (-) 189 WP_012118653.1 CsbD family protein -
  ACFW98_RS11450 (ACFW98_11450) - 2395599..2396078 (-) 480 WP_007407583.1 hypothetical protein -
  ACFW98_RS11455 (ACFW98_11455) rapC 2396201..2397331 (-) 1131 WP_007407584.1 tetratricopeptide repeat protein Regulator
  ACFW98_RS11460 (ACFW98_11460) moaA 2397522..2398547 (-) 1026 WP_012118655.1 GTP 3',8-cyclase MoaA -
  ACFW98_RS11465 (ACFW98_11465) fdhD 2398565..2399353 (-) 789 WP_015240754.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACFW98_RS11470 (ACFW98_11470) - 2399448..2399612 (-) 165 WP_007407587.1 hypothetical protein -
  ACFW98_RS11475 (ACFW98_11475) - 2399698..2400378 (-) 681 WP_032867411.1 VWA domain-containing protein -
  ACFW98_RS11480 (ACFW98_11480) - 2400688..2401374 (-) 687 WP_395096389.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44934.03 Da        Isoelectric Point: 5.3221

>NTDB_id=945205 ACFW98_RS11455 WP_007407584.1 2396201..2397331(-) (rapC) [Bacillus amyloliquefaciens strain JP5008]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=945205 ACFW98_RS11455 WP_007407584.1 2396201..2397331(-) (rapC) [Bacillus amyloliquefaciens strain JP5008]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGAGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATTGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399