Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   ACFW98_RS09795 Genome accession   NZ_CP170719
Coordinates   2039084..2041399 (-) Length   771 a.a.
NCBI ID   WP_144463907.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034084..2046399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS09785 (ACFW98_09785) cysI 2035358..2037073 (-) 1716 WP_003151735.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  ACFW98_RS09790 (ACFW98_09790) - 2037101..2038909 (-) 1809 WP_395096323.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  ACFW98_RS09795 (ACFW98_09795) helD 2039084..2041399 (-) 2316 WP_144463907.1 RNA polymerase recycling motor HelD Machinery gene
  ACFW98_RS09800 (ACFW98_09800) - 2041572..2042180 (-) 609 WP_007410017.1 trimeric intracellular cation channel family protein -
  ACFW98_RS09805 (ACFW98_09805) - 2042403..2043203 (+) 801 WP_015418210.1 zinc-dependent metalloprotease -
  ACFW98_RS09810 (ACFW98_09810) - 2043237..2043656 (-) 420 WP_015418211.1 disulfide oxidoreductase -
  ACFW98_RS09815 (ACFW98_09815) - 2043646..2044317 (-) 672 WP_012118444.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88136.24 Da        Isoelectric Point: 6.1590

>NTDB_id=945193 ACFW98_RS09795 WP_144463907.1 2039084..2041399(-) (helD) [Bacillus amyloliquefaciens strain JP5008]
MAKRDKEWKEEQERLNFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYILRRLGRKFDCESPYEQLEYCLTE
QNQDVLFVRLAAIAYKASPAFQALIDRYAGSLSVSGLMCKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARQEQLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAVQYKSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=945193 ACFW98_RS09795 WP_144463907.1 2039084..2041399(-) (helD) [Bacillus amyloliquefaciens strain JP5008]
ATGGCAAAACGTGATAAAGAGTGGAAAGAAGAGCAGGAAAGACTCAATTTTGTCATGAAGGAACTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGGCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGATGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCAGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAA
ACGATAGAAGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGGCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGAAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGTCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTTTCCGCCGTATTGCCGGAATTAGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCCTCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGGACGTACTTTTCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCACCAGCTTTCCAGGCCCTGATTGACCG
TTATGCCGGATCGCTTTCGGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGATTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CAGAAACGCATTTGCAGAACGGTCACTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTATTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTTTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
AGTATCTTCCCAGCTGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCAGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCAGTCAGCGCCGAGAGCGGTGTCCGCTTGATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGACGCCTCTGCTGTCCAGTACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATCTGACCGTTTTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(601-686)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(415-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.753

99.87

0.667