Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R9B17_RS05865 Genome accession   NZ_AP028399
Coordinates   1135274..1135768 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130274..1140768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS05850 (B11515_11570) - 1131660..1132838 (-) 1179 WP_032586703.1 metal-dependent hydrolase -
  R9B17_RS05855 (B11515_11580) gpsA 1132848..1133744 (-) 897 WP_317739042.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R9B17_RS05860 (B11515_11590) gatB 1133741..1135159 (-) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R9B17_RS05865 (B11515_11600) luxS 1135274..1135768 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  R9B17_RS05870 (B11515_11610) - 1136081..1137073 (+) 993 WP_002869635.1 isopenicillin N synthase family dioxygenase -
  R9B17_RS05875 (B11515_11620) - 1137084..1137854 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R9B17_RS05880 (B11515_11630) metE 1137866..1140130 (+) 2265 WP_032586706.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=94517 R9B17_RS05865 WP_002859279.1 1135274..1135768(+) (luxS) [Campylobacter jejuni strain BCH-11515]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94517 R9B17_RS05865 WP_002859279.1 1135274..1135768(+) (luxS) [Campylobacter jejuni strain BCH-11515]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713