Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACFW98_RS04850 Genome accession   NZ_CP170719
Coordinates   1066310..1067800 (-) Length   496 a.a.
NCBI ID   WP_039254663.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061310..1072800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS04820 (ACFW98_04820) gudB 1061375..1062649 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  ACFW98_RS04825 (ACFW98_04825) - 1062810..1063394 (-) 585 WP_003153412.1 genetic competence negative regulator -
  ACFW98_RS04830 (ACFW98_04830) - 1063546..1064334 (-) 789 WP_254003270.1 metallophosphoesterase -
  ACFW98_RS04835 (ACFW98_04835) - 1064421..1064879 (-) 459 WP_007409443.1 YpbF family protein -
  ACFW98_RS04840 (ACFW98_04840) - 1064948..1065730 (-) 783 WP_039254669.1 LysM peptidoglycan-binding domain-containing protein -
  ACFW98_RS04845 (ACFW98_04845) - 1065708..1066295 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  ACFW98_RS04850 (ACFW98_04850) recS 1066310..1067800 (-) 1491 WP_039254663.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACFW98_RS04855 (ACFW98_04855) - 1067793..1068851 (-) 1059 WP_047935902.1 helix-turn-helix domain-containing protein -
  ACFW98_RS04860 (ACFW98_04860) - 1069120..1069368 (+) 249 WP_003153403.1 ferredoxin -
  ACFW98_RS04865 (ACFW98_04865) - 1069510..1070082 (-) 573 WP_015417737.1 ECF transporter S component -
  ACFW98_RS04870 (ACFW98_04870) serA 1070571..1072148 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55999.03 Da        Isoelectric Point: 6.2481

>NTDB_id=945151 ACFW98_RS04850 WP_039254663.1 1066310..1067800(-) (recS) [Bacillus amyloliquefaciens strain JP5008]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNTEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLFLQGKTT
KDQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=945151 ACFW98_RS04850 WP_039254663.1 1066310..1067800(-) (recS) [Bacillus amyloliquefaciens strain JP5008]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAACATTCTCCTGGCGGCAGAACATTTGGCTGATAATA
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAACGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTTTCTGCAAGGAAAAACCACA
AAAGACCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683