Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WAA20_RS15125 Genome accession   NZ_CP146963
Coordinates   3602474..3603859 (-) Length   461 a.a.
NCBI ID   WP_073389137.1    Uniprot ID   A0A1M6BDK2
Organism   Butyrivibrio fibrisolvens strain D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597474..3608859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA20_RS15095 (WAA20_15110) - 3597575..3598954 (-) 1380 WP_081373913.1 carbohydrate ABC transporter permease -
  WAA20_RS15100 (WAA20_15115) - 3599039..3600397 (-) 1359 WP_073389143.1 extracellular solute-binding protein -
  WAA20_RS15105 (WAA20_15120) - 3600785..3601258 (+) 474 WP_073389142.1 LacI family DNA-binding transcriptional regulator -
  WAA20_RS15110 (WAA20_15125) - 3601298..3601873 (+) 576 WP_278308454.1 substrate-binding domain-containing protein -
  WAA20_RS15120 (WAA20_15135) - 3602253..3602477 (-) 225 WP_073389138.1 hypothetical protein -
  WAA20_RS15125 (WAA20_15140) radA 3602474..3603859 (-) 1386 WP_073389137.1 DNA repair protein RadA Machinery gene
  WAA20_RS15130 (WAA20_15145) - 3604053..3604463 (-) 411 WP_073389135.1 endosialidase -
  WAA20_RS15135 (WAA20_15150) - 3604544..3607129 (-) 2586 WP_073389134.1 ATP-dependent Clp protease ATP-binding subunit -
  WAA20_RS15140 (WAA20_15155) - 3607174..3607548 (-) 375 WP_073389132.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50240.69 Da        Isoelectric Point: 6.0273

>NTDB_id=945131 WAA20_RS15125 WP_073389137.1 3602474..3603859(-) (radA) [Butyrivibrio fibrisolvens strain D1]
MPAKIKTAFFCQNCGYESSKWMGQCPSCHEWNTMVEEMVKPEPKNKRASLGSGISGTTSSAAISPKALSEIELGQEDRSD
THIGELNRVLGGGLVRGSLTLVGGDPGIGKSTLLLQVARNMSDDGHSILYISGEESLRQIKLRANRIGEFTDNLKFLCET
NLSTIESVITKDKPEIVIIDSIQTMFNEDVTSAPGSVSQVRETTAVLLRIAKSMNVSIFIVGHVTKEGTVAGPRVLEHMV
DTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMREDGLAEVQNPSEFMLDGRPEDASGSIVTCSIEGTRPILLEIQAL
VCRTSFGFPRRQANGTDYNRVNLLMAVLEKRVGLQMADCDAYVNLAGGMKLQEPALDLGICLAVISSFKNKPIDSSVVAF
GEVGLSGEVRSVSMTEQRVMEAKKLGFKTIILPKAYESKLKDTKGLDIIGVSSLQDAMRIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=945131 WAA20_RS15125 WP_073389137.1 3602474..3603859(-) (radA) [Butyrivibrio fibrisolvens strain D1]
ATGCCTGCTAAGATCAAAACAGCGTTCTTTTGTCAAAACTGTGGATATGAATCGTCTAAATGGATGGGACAGTGCCCTTC
ATGCCATGAGTGGAATACCATGGTTGAAGAGATGGTTAAGCCTGAACCTAAGAATAAAAGAGCGTCTCTTGGAAGTGGAA
TATCCGGAACCACTTCATCTGCAGCTATCAGTCCAAAAGCTCTGTCCGAGATCGAGCTTGGACAGGAAGACAGAAGCGAT
ACACATATAGGAGAGCTTAACAGAGTACTTGGAGGAGGTCTTGTTAGAGGATCTCTTACACTTGTCGGCGGTGATCCCGG
TATAGGTAAATCAACCCTTCTTCTTCAGGTTGCAAGGAATATGTCTGATGATGGACATAGCATCTTATATATTTCGGGAG
AGGAATCGCTTCGTCAGATCAAGCTACGAGCTAACCGTATAGGTGAGTTTACAGATAATCTTAAATTCCTTTGTGAGACT
AATCTTTCAACTATAGAATCAGTAATAACTAAAGATAAGCCTGAGATAGTGATAATAGACTCTATTCAGACTATGTTTAA
TGAGGACGTAACGTCTGCACCTGGTAGTGTTTCGCAGGTCAGAGAGACTACGGCTGTTCTTCTTAGAATTGCTAAGAGCA
TGAACGTGTCTATATTTATAGTGGGCCATGTGACTAAAGAAGGAACTGTTGCAGGTCCAAGAGTCCTTGAACACATGGTA
GATACAGTGCTGTATTTCGAGGGTGACAGACATGCATCCTACAGGATACTTCGAGGTGTCAAGAACAGGTTCGGATCTAC
TAATGAGATCGGCGTATTTGAGATGCGCGAAGACGGCCTTGCTGAAGTTCAGAACCCGTCAGAGTTCATGCTGGACGGAA
GACCGGAAGATGCAAGCGGCAGTATTGTAACCTGCTCAATAGAAGGCACAAGACCTATACTTCTTGAAATCCAGGCCCTT
GTGTGTCGTACAAGCTTTGGATTCCCTAGAAGACAGGCTAATGGCACTGACTATAACAGAGTTAATCTCCTTATGGCGGT
TCTTGAAAAAAGAGTTGGTCTTCAGATGGCAGATTGTGATGCCTATGTAAATCTCGCAGGAGGAATGAAGCTGCAGGAGC
CTGCTCTTGATCTTGGCATCTGCCTTGCTGTTATATCAAGCTTTAAGAATAAACCGATCGATTCGTCTGTAGTTGCTTTT
GGTGAAGTTGGTCTTTCTGGTGAAGTAAGAAGCGTAAGTATGACAGAGCAAAGGGTAATGGAAGCTAAGAAACTTGGCTT
TAAAACAATAATCCTTCCTAAGGCATATGAGAGTAAGCTGAAAGATACTAAGGGACTTGATATCATAGGCGTTAGCTCAC
TTCAGGATGCGATGAGGATATTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

AAA domain (AAA_25)

(75-228)

Subunit ChlI of Mg-chelatase (ChlI)

(352-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M6BDK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

58.425

99.132

0.579
  radA Streptococcus mitis NCTC 12261

51.86

99.132

0.514
  radA Streptococcus pneumoniae Rx1

51.86

99.132

0.514
  radA Streptococcus pneumoniae D39

51.86

99.132

0.514
  radA Streptococcus pneumoniae R6

51.86

99.132

0.514
  radA Streptococcus pneumoniae TIGR4

51.86

99.132

0.514
  radA Streptococcus mitis SK321

51.641

99.132

0.512