Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACFW98_RS01420 Genome accession   NZ_CP170719
Coordinates   297672..298694 (+) Length   340 a.a.
NCBI ID   WP_007409697.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 292672..303694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS01385 (ACFW98_01385) - 293032..293271 (+) 240 WP_003154475.1 YlbE-like family protein -
  ACFW98_RS01390 (ACFW98_01390) ylbF 293342..293791 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  ACFW98_RS01395 (ACFW98_01395) - 293850..294122 (+) 273 WP_003154470.1 YlbG family protein -
  ACFW98_RS01400 (ACFW98_01400) rsmD 294421..294975 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACFW98_RS01405 (ACFW98_01405) coaD 294980..295462 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACFW98_RS01410 (ACFW98_01410) ylbJ 295481..296707 (-) 1227 WP_395096731.1 sporulation integral membrane protein YlbJ -
  ACFW98_RS01415 (ACFW98_01415) - 296887..297666 (+) 780 WP_007409696.1 patatin family protein -
  ACFW98_RS01420 (ACFW98_01420) sepM 297672..298694 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator
  ACFW98_RS01425 (ACFW98_01425) - 298713..299960 (-) 1248 WP_395096732.1 nucleotidyltransferase -
  ACFW98_RS01430 (ACFW98_01430) - 300169..300687 (+) 519 WP_007409699.1 DUF177 domain-containing protein -
  ACFW98_RS01435 (ACFW98_01435) rpmF 300709..300888 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ACFW98_RS01440 (ACFW98_01440) gerR 301046..301621 (+) 576 WP_039063041.1 sporulation-specific transcriptional regulator GerR -
  ACFW98_RS01445 (ACFW98_01445) - 301662..302144 (-) 483 WP_007611262.1 N-acetyltransferase -
  ACFW98_RS01450 (ACFW98_01450) - 302307..303188 (+) 882 WP_324635866.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37448.99 Da        Isoelectric Point: 7.3837

>NTDB_id=945129 ACFW98_RS01420 WP_007409697.1 297672..298694(+) (sepM) [Bacillus amyloliquefaciens strain JP5008]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYEEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=945129 ACFW98_RS01420 WP_007409697.1 297672..298694(+) (sepM) [Bacillus amyloliquefaciens strain JP5008]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGAAGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGCATTTATGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATTATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGTGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGGACGGGGACAATCGACGTGGACGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGGAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(127-193)

Peptidase family M50 (Peptidase_M50)

(99-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.953

100

0.394