Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFW98_RS01080 Genome accession   NZ_CP170719
Coordinates   190025..190309 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   A7Z459
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 185025..195309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS01060 (ACFW98_01060) - 186268..187176 (+) 909 WP_095353004.1 ketopantoate reductase family protein -
  ACFW98_RS01065 (ACFW98_01065) - 187208..188440 (-) 1233 WP_094032405.1 aminopeptidase -
  ACFW98_RS01070 (ACFW98_01070) - 188541..188675 (-) 135 WP_003154559.1 protein YkpC -
  ACFW98_RS01075 (ACFW98_01075) mreBH 188747..189754 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  ACFW98_RS01080 (ACFW98_01080) abrB 190025..190309 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACFW98_RS01085 (ACFW98_01085) - 190482..191786 (+) 1305 WP_064108138.1 ATP-binding protein -
  ACFW98_RS01090 (ACFW98_01090) - 191788..192615 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  ACFW98_RS01095 (ACFW98_01095) ktrC 192656..193321 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACFW98_RS01100 (ACFW98_01100) ade 193470..195203 (+) 1734 WP_094032406.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=945127 ACFW98_RS01080 WP_003154557.1 190025..190309(+) (abrB) [Bacillus amyloliquefaciens strain JP5008]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=945127 ACFW98_RS01080 WP_003154557.1 190025..190309(+) (abrB) [Bacillus amyloliquefaciens strain JP5008]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543