Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFXAA_RS16965 Genome accession   NZ_CP170717
Coordinates   3484353..3485057 (+) Length   234 a.a.
NCBI ID   WP_031379302.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3479353..3490057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS16945 (ACFXAA_16945) - 3479837..3481102 (-) 1266 WP_007408798.1 NAD(P)/FAD-dependent oxidoreductase -
  ACFXAA_RS16950 (ACFXAA_16950) - 3481310..3482947 (+) 1638 WP_039254168.1 polysaccharide biosynthesis protein -
  ACFXAA_RS16955 (ACFXAA_16955) - 3483004..3483723 (+) 720 WP_007408795.1 pseudouridine synthase -
  ACFXAA_RS16960 (ACFXAA_16960) - 3483851..3484072 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACFXAA_RS16965 (ACFXAA_16965) pptA 3484353..3485057 (+) 705 WP_031379302.1 ABC transporter ATP-binding protein Regulator
  ACFXAA_RS16970 (ACFXAA_16970) - 3485054..3486214 (+) 1161 WP_031379301.1 ABC transporter permease -
  ACFXAA_RS16975 (ACFXAA_16975) - 3486248..3487552 (-) 1305 WP_014418668.1 NCS2 family permease -
  ACFXAA_RS16980 (ACFXAA_16980) pepV 3487648..3489039 (+) 1392 WP_039254172.1 dipeptidase PepV -
  ACFXAA_RS16985 (ACFXAA_16985) cysK 3489077..3490048 (-) 972 WP_190664495.1 cysteine synthase A -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25717.39 Da        Isoelectric Point: 4.4290

>NTDB_id=945089 ACFXAA_RS16965 WP_031379302.1 3484353..3485057(+) (pptA) [Bacillus amyloliquefaciens strain JP5014]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGMEGEECRERAGRLLEEFSLTSVTHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=945089 ACFXAA_RS16965 WP_031379302.1 3484353..3485057(+) (pptA) [Bacillus amyloliquefaciens strain JP5014]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAATGCGGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGCACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATAGAGGGCGGAATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCATCTCGAGCTGACCGGGTCATTGCGGGGCATGGAAGGGGAAGAGTGCCGTGAACGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAACACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTTATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGAATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453