Detailed information NTG0945083

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ACFXAA_RS15735
• Genome accession: NZ_CP170717
• Coordinates: 3254753..3255883 (+)
• Length: 376 a.a.
• NCBI ID: WP_015418149.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5014
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3249753..3260883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAA_RS15715 (ACFXAA_15715)	-	3250605..3251816 (+)	1212	WP_197985421.1	alanine--glyoxylate aminotransferase family protein	-
ACFXAA_RS15720 (ACFXAA_15720)	-	3251933..3253129 (+)	1197	WP_015418151.1	tetracycline resistance MFS efflux pump	-
ACFXAA_RS15725 (ACFXAA_15725)	-	3253186..3254319 (+)	1134	WP_015418150.1	hypothetical protein	-
ACFXAA_RS15730 (ACFXAA_15730)	-	3254445..3254624 (+)	180	WP_007410112.1	hypothetical protein	-
ACFXAA_RS15735 (ACFXAA_15735)	rapC	3254753..3255883 (+)	1131	WP_015418149.1	Rap family tetratricopeptide repeat protein	Regulator
ACFXAA_RS15740 (ACFXAA_15740)	-	3256331..3257926 (-)	1596	WP_156240473.1	PucR family transcriptional regulator	-
ACFXAA_RS15745 (ACFXAA_15745)	-	3258110..3259474 (+)	1365	WP_161620146.1	allantoinase	-
ACFXAA_RS15750 (ACFXAA_15750)	-	3259547..3259900 (+)	354	WP_156240471.1	hypothetical protein	-
ACFXAA_RS15755 (ACFXAA_15755)	-	3259927..3260778 (+)	852	WP_015418145.1	DUF72 domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44339.74 Da
• Isoelectric Point: 6.3557

>NTDB_id=945083 ACFXAA_RS15735 WP_015418149.1 3254753..3255883(+) (rapC) [Bacillus amyloliquefaciens strain JP5014]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLETIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVFAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=945083 ACFXAA_RS15735 WP_015418149.1 3254753..3255883(+) (rapC) [Bacillus amyloliquefaciens strain JP5014]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAACAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
AAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTGGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCCGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTTTGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	39.842	100	0.402