Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFXAA_RS13515 Genome accession   NZ_CP170717
Coordinates   2791226..2792356 (+) Length   376 a.a.
NCBI ID   WP_039253522.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786226..2797356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS13490 (ACFXAA_13490) - 2787184..2787870 (+) 687 WP_015418411.1 VWA domain-containing protein -
  ACFXAA_RS13495 (ACFXAA_13495) - 2788179..2788859 (+) 681 WP_039253514.1 VWA domain-containing protein -
  ACFXAA_RS13500 (ACFXAA_13500) - 2788945..2789109 (+) 165 WP_007407587.1 hypothetical protein -
  ACFXAA_RS13505 (ACFXAA_13505) fdhD 2789204..2789992 (+) 789 WP_017418742.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACFXAA_RS13510 (ACFXAA_13510) moaA 2790010..2791035 (+) 1026 WP_039253519.1 GTP 3',8-cyclase MoaA -
  ACFXAA_RS13515 (ACFXAA_13515) rapC 2791226..2792356 (+) 1131 WP_039253522.1 tetratricopeptide repeat protein Regulator
  ACFXAA_RS13520 (ACFXAA_13520) - 2792478..2792957 (+) 480 WP_039253524.1 hypothetical protein -
  ACFXAA_RS13525 (ACFXAA_13525) - 2793031..2793219 (+) 189 WP_015418407.1 CsbD family protein -
  ACFXAA_RS13530 (ACFXAA_13530) ureA 2793573..2793890 (+) 318 WP_007407581.1 urease subunit gamma -
  ACFXAA_RS13535 (ACFXAA_13535) ureB 2793887..2794261 (+) 375 WP_012118652.1 urease subunit beta -
  ACFXAA_RS13540 (ACFXAA_13540) ureC 2794258..2795967 (+) 1710 WP_007407580.1 urease subunit alpha -
  ACFXAA_RS13545 (ACFXAA_13545) - 2796108..2796512 (+) 405 WP_003151203.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44932.05 Da        Isoelectric Point: 5.3243

>NTDB_id=945066 ACFXAA_RS13515 WP_039253522.1 2791226..2792356(+) (rapC) [Bacillus amyloliquefaciens strain JP5014]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMELIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=945066 ACFXAA_RS13515 WP_039253522.1 2791226..2792356(+) (rapC) [Bacillus amyloliquefaciens strain JP5014]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAAGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCGCTCAATATGGAGTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(192-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.105

100

0.426
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402