Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFXAA_RS11125 Genome accession   NZ_CP170717
Coordinates   2328074..2328364 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2323074..2333364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS11110 (ACFXAA_11110) - 2323295..2324509 (-) 1215 WP_031379322.1 G5 and 3D domain-containing protein -
  ACFXAA_RS11115 (ACFXAA_11115) - 2324755..2325522 (-) 768 WP_017419495.1 TatD family hydrolase -
  ACFXAA_RS11120 (ACFXAA_11120) metG 2325599..2327590 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  ACFXAA_RS11125 (ACFXAA_11125) abrB 2328074..2328364 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACFXAA_RS11130 (ACFXAA_11130) rsmI 2328414..2329295 (-) 882 WP_061890392.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACFXAA_RS11135 (ACFXAA_11135) - 2329270..2329569 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACFXAA_RS11140 (ACFXAA_11140) - 2329556..2330299 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACFXAA_RS11145 (ACFXAA_11145) yabA 2330360..2330719 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACFXAA_RS11150 (ACFXAA_11150) yaaT 2330734..2331561 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  ACFXAA_RS11155 (ACFXAA_11155) holB 2331564..2332553 (-) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  ACFXAA_RS11160 (ACFXAA_11160) - 2332565..2333005 (-) 441 WP_004264730.1 YaaR family protein -
  ACFXAA_RS11165 (ACFXAA_11165) darA 2333018..2333347 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=945050 ACFXAA_RS11125 WP_169510469.1 2328074..2328364(+) (abrB) [Bacillus amyloliquefaciens strain JP5014]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=945050 ACFXAA_RS11125 WP_169510469.1 2328074..2328364(+) (abrB) [Bacillus amyloliquefaciens strain JP5014]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979