Detailed information NTG0945043

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACFXAA_RS09830
• Genome accession: NZ_CP170717
• Coordinates: 2062356..2063477 (-)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5014
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2057356..2068477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAA_RS09810 (ACFXAA_09810)	-	2057804..2058499 (-)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-
ACFXAA_RS09815 (ACFXAA_09815)	-	2058554..2059513 (-)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
ACFXAA_RS09820 (ACFXAA_09820)	-	2059698..2061377 (-)	1680	WP_039252865.1	alpha-glucosidase	-
ACFXAA_RS09825 (ACFXAA_09825)	-	2061461..2062240 (-)	780	WP_039252868.1	glucose 1-dehydrogenase	-
ACFXAA_RS09830 (ACFXAA_09830)	rapF	2062356..2063477 (-)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
ACFXAA_RS09835 (ACFXAA_09835)	-	2063587..2064090 (+)	504	WP_015416743.1	M15 family metallopeptidase	-
ACFXAA_RS09840 (ACFXAA_09840)	-	2064087..2065445 (-)	1359	WP_033575141.1	YcdB/YcdC domain-containing protein	-
ACFXAA_RS09845 (ACFXAA_09845)	-	2065646..2067046 (-)	1401	WP_156240540.1	YcdB/YcdC domain-containing protein	-
ACFXAA_RS09850 (ACFXAA_09850)	-	2067173..2068168 (+)	996	WP_015416740.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=945043 ACFXAA_RS09830 WP_033575143.1 2062356..2063477(-) (rapF) [Bacillus amyloliquefaciens strain JP5014]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=945043 ACFXAA_RS09830 WP_033575143.1 2062356..2063477(-) (rapF) [Bacillus amyloliquefaciens strain JP5014]
ATGAAATCCAAAATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCCCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGTATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAGGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402